RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 LENEPQ9Y5L5 61 aa7.48□□□□□ -1.21
CLIP1-204ENST00000501271 DOPEY1Q5JWR5 2465 aa7.48□□□□□ -1.21
CLIP1-204ENST00000501271 H3BUA1 57 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 SPRY2O43597 315 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 BRI3O95415 125 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 AVPP01185 164 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 TMEM97Q5BJF2 176 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 SMIM15Q7Z3B0 74 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 PCP2Q8IVA1 136 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.47□□□□□ -1.21
CLIP1-204ENST00000501271 IGKV3-7A0A075B6H7 116 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 F6UB75 175 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 CD5LO43866 347 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 NMUP48645 174 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 RPL11P62913 178 aaKnown RBP7.47□□□□□ -1.21
CLIP1-204ENST00000501271 OR10J6PQ8NGY7 276 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 LINC00477Q96M19 166 aa7.47□□□□□ -1.21
CLIP1-204ENST00000501271 CACNA1AO00555 2505 aa7.46□□□□□ -1.21
CLIP1-204ENST00000501271 OVOL1O14753 267 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 EDN2P20800 178 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 KIR3DS1Q14943 382 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 ZMAT4Q9H898 229 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 CSPG4Q6UVK1 2322 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 IGLV1-40P01703 118 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 PRSS1P07477 247 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 TMEM95Q3KNT9 176 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 TM4SF20Q53R12 229 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 FOXC2Q99958 501 aa7.46□□□□□ -1.22
CLIP1-204ENST00000501271 IGKV2D-26A0A0A0MRZ7 120 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 TRAV21A0A0B4J279 112 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 A1L4Q6 167 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 M0R381 172 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 SMIM17P0DL12 118 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 CFHR3Q02985 330 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 ADAMTSL5Q6ZMM2 481 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 NRGNQ92686 78 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 FAM19A4Q96LR4 140 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 RHPN1-AS1Q9BWJ2 59 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 HHLA3Q9XRX5 114 aa7.45□□□□□ -1.22
CLIP1-204ENST00000501271 C7orf71A4D174 169 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 LAGE3Q14657 143 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 ANXA2RQ3ZCQ2 193 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 OR4C5Q8NGB2 326 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 OR9G4Q8NGQ1 327 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 TRAV8-6A0A0B4J262 113 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 SRD5A1P18405 259 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 SEC11AP67812 179 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 AMMECR1LQ6DCA0 310 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 MRAP2Q96G30 205 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 TTTY13Q9BZ97 58 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 MUC4Q99102 2169 aa7.44□□□□□ -1.22
CLIP1-204ENST00000501271 SIVA1O15304 175 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 IGKCP01834 107 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 RNASE4P34096 147 aaKnown RBP7.43□□□□□ -1.22
CLIP1-204ENST00000501271 RNASE8Q8TDE3 154 aaKnown RBP7.43□□□□□ -1.22
CLIP1-204ENST00000501271 DAZ1Q9NQZ3 744 aaKnown RBP7.43□□□□□ -1.22
CLIP1-204ENST00000501271 ZANQ9Y493 2812 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 A0A0G2JLM5 398 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 TMEM8BA6NDV4 472 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 S100A4P26447 101 aaKnown RBP7.43□□□□□ -1.22
CLIP1-204ENST00000501271 ASIPP42127 132 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 HSD52Q0P140 79 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 APRG1Q8IVJ8 170 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 SMIM2Q9BVW6 85 aa7.43□□□□□ -1.22
CLIP1-204ENST00000501271 B4DSR2 109 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 GNRH2O43555 120 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 ATP5LO75964 103 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 C14orf178Q8N769 122 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 RASL10AQ92737 203 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 PEF1Q9UBV8 284 aaKnown RBP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 PHLDA3Q9Y5J5 127 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 K7EP13 123 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 DPM2O94777 84 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 RNASE3P12724 160 aaKnown RBP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 SRSF1Q07955 248 aaKnown RBP eCLIP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 ZC2HC1BQ5TFG8 222 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 C10orf99Q6UWK7 81 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 GTSCR1Q86UQ5 136 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 RPL39LQ96EH5 51 aaKnown RBP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 DPH3P1Q9H4G8 78 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 MRPL35Q9NZE8 188 aaKnown RBP7.42□□□□□ -1.22
CLIP1-204ENST00000501271 SMPXQ9UHP9 88 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 FBN2P35556 2912 aa7.42□□□□□ -1.22
CLIP1-204ENST00000501271 MYO18BQ8IUG5 2567 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 IGHV4-59P01825 116 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 MYOZ3Q8TDC0 251 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 TMEM160Q9NX00 188 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 ANKRD17O75179 2603 aaKnown RBP7.41□□□□□ -1.22
CLIP1-204ENST00000501271 A6NDN8 102 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 RNF223E7ERA6 249 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 MED14OSP0DP75 135 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 SUMO2P61956 95 aaKnown RBP7.41□□□□□ -1.22
CLIP1-204ENST00000501271 JMJD8Q96S16 334 aa7.41□□□□□ -1.22
CLIP1-204ENST00000501271 MGPP08493 103 aa7.4□□□□□ -1.22
CLIP1-204ENST00000501271 PSMB8P28062 276 aa7.4□□□□□ -1.22
CLIP1-204ENST00000501271 DEFB112Q30KQ8 113 aa7.4□□□□□ -1.22
CLIP1-204ENST00000501271 DCANP1Q8TF63 244 aa7.4□□□□□ -1.22
CLIP1-204ENST00000501271 A0A087WX48 190 aa7.4□□□□□ -1.23
CLIP1-204ENST00000501271 TRBV7-9A0A0J9YWB2 115 aa7.4□□□□□ -1.23
CLIP1-204ENST00000501271 KLLNB2CW77 178 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms