RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CLEC7AQ9BXN2 247 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 DAZ1Q9NQZ3 744 aaKnown RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 DAZ3Q9NR90 486 aaKnown RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 FOCADQ5VW36 1801 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 CCDC88CQ9P219 2028 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 A0A087WX48 190 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 TRAV8-3A0A0A6YYJ7 113 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 SPRY2O43597 315 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 C12orf74Q32Q52 190 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 FAM222AQ5U5X8 452 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 FAM90A2PQ658T7 463 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 PYGO2Q9BRQ0 406 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 RTBDNQ9BSG5 229 aaPredicted RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 CHAC1Q9BUX1 264 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 CHD7Q9P2D1 2997 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 TRAV21A0A0B4J279 112 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 WISP2O76076 250 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 KISS1Q15726 138 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 ANAPC10Q9UM13 185 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 hDV102S1A0JD36 115 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 E9PLD3 99 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 IGFBP3P17936 291 aaPredicted RBP4.06□□□□□ -1.76
USP54-216ENST00000498143 ZNF138P52744 262 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 LINC01006Q8NI28 216 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 TRGV11A0A075B6L2 103 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 ADARB2-AS1A8MUL3 147 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 PPYP01298 95 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 IGHV4-59P01825 116 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 CASC10Q5T4H9 136 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 TMEM200BQ69YZ2 307 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 MPLKIPQ8TAP9 179 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 NTN5Q8WTR8 489 aaPredicted RBP4.06□□□□□ -1.76
USP54-216ENST00000498143 AGPAT4-IT1Q9H0P7 198 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 SAA2-SAA4A0A096LPE2 208 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 TRAV41A0A0B4J266 112 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 OOSP1A8MZH6 123 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 NPYP01303 97 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 SAA4P35542 130 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 NKAPP1Q8N9T2 125 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 TIMM9Q9Y5J7 89 aa4.06□□□□□ -1.76
USP54-216ENST00000498143 PPP1R17O96001 155 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LINC00336Q6ZUF6 198 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LINC00596Q86U02 117 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 SERP2Q8N6R1 65 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LINC00482Q8N8I6 264 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LYZL4Q96KX0 146 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 TNCP24821 2201 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 MGAQ8IWI9 3026 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 TRBV19A0A075B6N1 114 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 C17orf100A8MU93 164 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 M0R2N4 97 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 HLA-DRB4P13762 266 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LGALS9CQ6DKI2 356 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 LINC01555Q8NAE3 123 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 MPC1Q9Y5U8 109 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 HLA-DRB4X5D2U9 266 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 WDFY4Q6ZS81 3184 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 J3QRE1 110 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 PRSS2P07478 247 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 COL8A2P25067 703 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 CXCL6P80162 114 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 Q6ZS49 121 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 NBEAQ8NFP9 2946 aa4.05□□□□□ -1.76
USP54-216ENST00000498143 CCL24O00175 119 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 FXYD3Q14802 87 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 AMTNQ6UX39 209 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 TMEM190Q8WZ59 177 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 PRSS27Q9BQR3 290 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 WFDC6Q9BQY6 131 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 A0A1W2PS18 150 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 HBDP02042 147 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 CRYGDP07320 174 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 ZNF137PP52743 207 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 MP68P56378 58 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 NANOS2P60321 138 aaKnown RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 LGALS9BQ3B8N2 356 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 PAPPA-AS1Q5QFB9 102 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 FAM53AQ6NSI3 398 aaPredicted RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 TEPPQ6URK8 271 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 OTORQ9NRC9 128 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 X6R8D5 127 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 NUP210Q8TEM1 1887 aaPredicted RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 IZUMO1RA6ND01 250 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 IGLL5B9A064 214 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 FOXA3P55318 350 aaPredicted RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 PAQR4Q8N4S7 273 aaPredicted RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 DSCR8Q96T75 97 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 PYGO1Q9Y3Y4 419 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 GREB1LQ9C091 1923 aaPredicted RBP4.04□□□□□ -1.76
USP54-216ENST00000498143 A0A0B4J2C4 111 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 K7ERJ3 54 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 IGF1P05019 195 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 FOXF1Q12946 379 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 MORN5Q5VZ52 161 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 GFI1Q99684 422 aa4.04□□□□□ -1.76
USP54-216ENST00000498143 FAM90A10PA6NDY2 464 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 OVOL2Q9BRP0 275 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 TM2D1Q9BX74 207 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 PRRC2CQ9Y520 2896 aaKnown RBP4.03□□□□□ -1.76
USP54-216ENST00000498143 FRYQ5TBA9 3013 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms