RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, human

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-222	ENST00000490207	MRPS16	Q9Y3D3	137 aa	Known RBP	13.67	□□□□□ -0.22
SMC4-222	ENST00000490207	ICOS	Q9Y6W8	199 aa		13.67	□□□□□ -0.22
SMC4-222	ENST00000490207	DYNC1H1	Q14204	4646 aa	Known RBP	13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	IGHV3-16	A0A0C4DH30	117 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	GNRH2	O43555	120 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	FLI1	Q01543	452 aa	Predicted RBP	13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	SLA	Q13239	276 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	FHL2	Q14192	279 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	ZFP69	Q49AA0	526 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	KCNS1	Q96KK3	526 aa		13.66	□□□□□ -0.22
SMC4-222	ENST00000490207	IGLV2-11	P01706	119 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	SFTA3	P0C7M3	94 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	CRYBA4	P53673	196 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	FGF8	P55075	233 aa	Predicted RBP	13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	UBE2G2	P60604	165 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	PRNT	Q86SH4	94 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	C6orf223	Q8N319	242 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	RASL10A	Q92737	203 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	DNAH11	Q96DT5	4516 aa		13.65	□□□□□ -0.22
SMC4-222	ENST00000490207	TRGV4	A0A0C4DH28	118 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	FBLL1	A6NHQ2	334 aa	Known RBP	13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	GCG	P01275	180 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	ZNF80	P51504	273 aa	Predicted RBP	13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	ZNF345	Q14585	488 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	TTC32	Q5I0X7	151 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	ZNF479	Q96JC4	524 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	HHLA3	Q9XRX5	114 aa		13.64	□□□□□ -0.23
SMC4-222	ENST00000490207	MAP1LC3B2	A6NCE7	125 aa		13.63	□□□□□ -0.23
SMC4-222	ENST00000490207		M0R2P5	195 aa		13.63	□□□□□ -0.23
SMC4-222	ENST00000490207	SMUG1	Q53HV7	270 aa		13.63	□□□□□ -0.23
SMC4-222	ENST00000490207	MAP1LC3B	Q9GZQ8	125 aa		13.63	□□□□□ -0.23
SMC4-222	ENST00000490207	TRAV4	A0A0B4J268	109 aa		13.62	□□□□□ -0.23
SMC4-222	ENST00000490207	IFNA7	P01567	189 aa		13.62	□□□□□ -0.23
SMC4-222	ENST00000490207	PFN1	P07737	140 aa	Known RBP	13.62	□□□□□ -0.23
SMC4-222	ENST00000490207	KCNRG	Q8N5I3	272 aa		13.62	□□□□□ -0.23
SMC4-222	ENST00000490207	FAM74A7	A6NL05	159 aa		13.61	□□□□□ -0.23
SMC4-222	ENST00000490207	KRTAP1-5	Q9BYS1	174 aa		13.61	□□□□□ -0.23
SMC4-222	ENST00000490207	C11orf21	Q9P2W6	132 aa		13.61	□□□□□ -0.23
SMC4-222	ENST00000490207	HERC2	O95714	4834 aa		13.61	□□□□□ -0.23
SMC4-222	ENST00000490207	TRAV34	A0A0B4J273	112 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	HMSD	A8MTL9	139 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	PEX7	O00628	323 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	PPT1	P50897	306 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	MRPL23	Q16540	153 aa	Known RBP	13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	SAPCD1	Q5SSQ6	148 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	OR4C5	Q8NGB2	326 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	PCNP	Q8WW12	178 aa	Known RBP	13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	LINC00479	Q96M42	142 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	NKX6-2	Q9C056	277 aa	Predicted RBP	13.6	□□□□□ -0.23
SMC4-222	ENST00000490207	ARL2-SNX15	V9GYD0	113 aa		13.6	□□□□□ -0.23
SMC4-222	ENST00000490207		A0A1W2PPQ1	181 aa		13.59	□□□□□ -0.23
SMC4-222	ENST00000490207		Q86TA4	180 aa		13.59	□□□□□ -0.23
SMC4-222	ENST00000490207	OR11H4	Q8NGC9	324 aa		13.59	□□□□□ -0.23
SMC4-222	ENST00000490207	SRI	P30626	198 aa		13.58	□□□□□ -0.24
SMC4-222	ENST00000490207	TNP2	Q05952	138 aa		13.58	□□□□□ -0.24
SMC4-222	ENST00000490207	STOML3	Q8TAV4	291 aa		13.58	□□□□□ -0.24
SMC4-222	ENST00000490207	HIST1H2BA	Q96A08	127 aa		13.58	□□□□□ -0.24
SMC4-222	ENST00000490207		A0A0D9SG52	128 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	KANTR	A0A1W2PQU2	76 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207		K7EQD1	137 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	BCL2L11	O43521	198 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	NXPH4	O95158	308 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	ORM1	P02763	201 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	GYPE	P15421	78 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	NEGR1	Q7Z3B1	354 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	C9orf85	Q96MD7	179 aa		13.57	□□□□□ -0.24
SMC4-222	ENST00000490207	ZNF471	Q9BX82	626 aa	Predicted RBP	13.57	□□□□□ -0.24
SMC4-222	ENST00000490207		C9JCJ5	164 aa		13.56	□□□□□ -0.24
SMC4-222	ENST00000490207	SIVA1	O15304	175 aa		13.56	□□□□□ -0.24
SMC4-222	ENST00000490207	SEC11B	P0C7V7	166 aa		13.56	□□□□□ -0.24
SMC4-222	ENST00000490207	FHIT	P49789	147 aa		13.56	□□□□□ -0.24
SMC4-222	ENST00000490207	BOLA1	Q9Y3E2	137 aa		13.56	□□□□□ -0.24
SMC4-222	ENST00000490207	ZNF876P	Q49A33	203 aa		13.55	□□□□□ -0.24
SMC4-222	ENST00000490207	LYPD5	Q6UWN5	251 aa		13.55	□□□□□ -0.24
SMC4-222	ENST00000490207	UMAD1	C9J7I0	102 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	UBE2G1	P62253	170 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	CST9LP1	Q5W188	147 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	FAM213B	Q8TBF2	198 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	FMC1	Q96HJ9	113 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	TXNDC17	Q9BRA2	123 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	TCEAL7	Q9BRU2	100 aa		13.54	□□□□□ -0.24
SMC4-222	ENST00000490207	RNASE3	P12724	160 aa	Known RBP	13.53	□□□□□ -0.24
SMC4-222	ENST00000490207	GATA1	P15976	413 aa	Predicted RBP	13.53	□□□□□ -0.24
SMC4-222	ENST00000490207	IGKV3D-20	A0A0C4DH25	116 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	LOC100131303	A0A0U1RQF7	123 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	FABP5P3	A8MUU1	101 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	RS1	O15537	224 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	PFDN1	O60925	122 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	BTF3	P20290	206 aa	Known RBP	13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	EIF5A	P63241	154 aa	Known RBP	13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	ZNF506	Q5JVG8	444 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	CFAP126	Q5VTH2	177 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	DPPA3	Q6W0C5	159 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	ZNF575	Q86XF7	245 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	SFT2D1	Q8WV19	159 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207	KIAA1109	Q2LD37	5005 aa		13.52	□□□□□ -0.25
SMC4-222	ENST00000490207		A0A1B0GV50	99 aa		13.51	□□□□□ -0.25
SMC4-222	ENST00000490207	PGPEP1L	A6NFU8	196 aa		13.51	□□□□□ -0.25
SMC4-222	ENST00000490207	S100A4	P26447	101 aa	Known RBP	13.51	□□□□□ -0.25
SMC4-222	ENST00000490207	ASIP	P42127	132 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 68 ms