RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 TMEM75Q8N9X5 138 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 RASL10AQ92737 203 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 LINC00479Q96M42 142 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 SPXQ9BT56 116 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 NDFIP1Q9BT67 221 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 C11orf21Q9P2W6 132 aa14.66□□□□□ -0.06
LIME1-207ENST00000489212 MAP1LC3B2A6NCE7 125 aa14.65□□□□□ -0.06
LIME1-207ENST00000489212 FAM74A7A6NL05 159 aa14.65□□□□□ -0.06
LIME1-207ENST00000489212 FHL2Q14192 279 aa14.65□□□□□ -0.06
LIME1-207ENST00000489212 MAP1LC3BQ9GZQ8 125 aa14.65□□□□□ -0.06
LIME1-207ENST00000489212 TRAV34A0A0B4J273 112 aa14.64□□□□□ -0.07
LIME1-207ENST00000489212 GCGP01275 180 aa14.64□□□□□ -0.07
LIME1-207ENST00000489212 A0A0D9SG52 128 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 NBDYA0A0U1RRE5 68 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 A0A1B0GVY2 172 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 PRSS29PA6NIE9 313 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 PAX4O43316 350 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 SFTA3P0C7M3 94 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 ZNF479Q96JC4 524 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 SDF2L1Q9HCN8 221 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 DNAH11Q96DT5 4516 aa14.63□□□□□ -0.07
LIME1-207ENST00000489212 DYNC1H1Q14204 4646 aaKnown RBP14.62□□□□□ -0.07
LIME1-207ENST00000489212 PEX7O00628 323 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 BCL2L11O43521 198 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 IFNA7P01567 189 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 CRYBA4P53673 196 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 SMUG1Q53HV7 270 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 KCNS1Q96KK3 526 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 PRO0255Q9UI72 69 aa14.62□□□□□ -0.07
LIME1-207ENST00000489212 FBLL1A6NHQ2 334 aaKnown RBP14.61□□□□□ -0.07
LIME1-207ENST00000489212 M0R2P5 195 aa14.61□□□□□ -0.07
LIME1-207ENST00000489212 PFN1P07737 140 aaKnown RBP14.61□□□□□ -0.07
LIME1-207ENST00000489212 SEC11BP0C7V7 166 aa14.61□□□□□ -0.07
LIME1-207ENST00000489212 C1orf134Q5TEV5 83 aa14.61□□□□□ -0.07
LIME1-207ENST00000489212 ZNF471Q9BX82 626 aaPredicted RBP14.61□□□□□ -0.07
LIME1-207ENST00000489212 Q9H8V8 135 aa14.61□□□□□ -0.07
LIME1-207ENST00000489212 HHLA3Q9XRX5 114 aa14.61□□□□□ -0.07
LIME1-207ENST00000489212 KANTRA0A1W2PQU2 76 aa14.6□□□□□ -0.07
LIME1-207ENST00000489212 SAPCD1Q5SSQ6 148 aa14.6□□□□□ -0.07
LIME1-207ENST00000489212 UPK3BQ9BT76 320 aa14.6□□□□□ -0.07
LIME1-207ENST00000489212 NKX6-2Q9C056 277 aaPredicted RBP14.6□□□□□ -0.07
LIME1-207ENST00000489212 MRPS16Q9Y3D3 137 aaKnown RBP14.6□□□□□ -0.07
LIME1-207ENST00000489212 ARL2-SNX15V9GYD0 113 aa14.6□□□□□ -0.07
LIME1-207ENST00000489212 SLAQ13239 276 aa14.59□□□□□ -0.07
LIME1-207ENST00000489212 ZFP69Q49AA0 526 aa14.59□□□□□ -0.07
LIME1-207ENST00000489212 TMUB2Q71RG4 321 aa14.59□□□□□ -0.07
LIME1-207ENST00000489212 Q86TA4 180 aa14.59□□□□□ -0.07
LIME1-207ENST00000489212 TRAV4A0A0B4J268 109 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 TRGV4A0A0C4DH28 118 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 FAM213BQ8TBF2 198 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 HIST1H2BAQ96A08 127 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 KRTAP1-5Q9BYS1 174 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 ICOSQ9Y6W8 199 aa14.58□□□□□ -0.08
LIME1-207ENST00000489212 PPT1P50897 306 aa14.57□□□□□ -0.08
LIME1-207ENST00000489212 SOHLH1Q5JUK2 328 aa14.57□□□□□ -0.08
LIME1-207ENST00000489212 STOML3Q8TAV4 291 aa14.57□□□□□ -0.08
LIME1-207ENST00000489212 MBD3L1Q8WWY6 194 aa14.57□□□□□ -0.08
LIME1-207ENST00000489212 UMAD1C9J7I0 102 aa14.56□□□□□ -0.08
LIME1-207ENST00000489212 OR4C5Q8NGB2 326 aa14.56□□□□□ -0.08
LIME1-207ENST00000489212 SFT2D1Q8WV19 159 aa14.56□□□□□ -0.08
LIME1-207ENST00000489212 C9orf85Q96MD7 179 aa14.56□□□□□ -0.08
LIME1-207ENST00000489212 IGKV3D-20A0A0C4DH25 116 aa14.55□□□□□ -0.08
LIME1-207ENST00000489212 A0A1B0GV50 99 aa14.55□□□□□ -0.08
LIME1-207ENST00000489212 RNASE3P12724 160 aaKnown RBP14.55□□□□□ -0.08
LIME1-207ENST00000489212 CST9LP1Q5W188 147 aa14.55□□□□□ -0.08
LIME1-207ENST00000489212 DPPA3Q6W0C5 159 aa14.55□□□□□ -0.08
LIME1-207ENST00000489212 HERC2O95714 4834 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 KIAA1109Q2LD37 5005 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 C9JCJ5 164 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 K7EQD1 137 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 PAGE4O60829 102 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 PFDN1O60925 122 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 CRIP1P50238 77 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 C6orf223Q8N319 242 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 ZC2HC1AQ96GY0 325 aa14.54□□□□□ -0.08
LIME1-207ENST00000489212 MRPL23Q16540 153 aaKnown RBP14.53□□□□□ -0.08
LIME1-207ENST00000489212 ZNF876PQ49A33 203 aa14.53□□□□□ -0.08
LIME1-207ENST00000489212 Q6ZNX1 250 aa14.53□□□□□ -0.08
LIME1-207ENST00000489212 TCTE3Q8IZS6 198 aa14.53□□□□□ -0.08
LIME1-207ENST00000489212 FABP5P3A8MUU1 101 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 TPT1P13693 172 aaKnown RBP14.52□□□□□ -0.09
LIME1-207ENST00000489212 GYPEP15421 78 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 EIF5AP63241 154 aaKnown RBP14.52□□□□□ -0.09
LIME1-207ENST00000489212 LGALSLQ3ZCW2 172 aaPredicted RBP14.52□□□□□ -0.09
LIME1-207ENST00000489212 LYPD5Q6UWN5 251 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 COX8CQ7Z4L0 72 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 FMC1Q96HJ9 113 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 TCEAL7Q9BRU2 100 aa14.52□□□□□ -0.09
LIME1-207ENST00000489212 PGPEP1LA6NFU8 196 aa14.51□□□□□ -0.09
LIME1-207ENST00000489212 ZNF506Q5JVG8 444 aa14.51□□□□□ -0.09
LIME1-207ENST00000489212 CFAP126Q5VTH2 177 aa14.51□□□□□ -0.09
LIME1-207ENST00000489212 NEGR1Q7Z3B1 354 aa14.51□□□□□ -0.09
LIME1-207ENST00000489212 ZFP30Q9Y2G7 519 aa14.51□□□□□ -0.09
LIME1-207ENST00000489212 TRBV6-1A0A0K0K1D8 114 aa14.5□□□□□ -0.09
LIME1-207ENST00000489212 LOC100131303A0A0U1RQF7 123 aa14.5□□□□□ -0.09
LIME1-207ENST00000489212 RS1O15537 224 aa14.5□□□□□ -0.09
LIME1-207ENST00000489212 NXPH4O95158 308 aa14.5□□□□□ -0.09
LIME1-207ENST00000489212 H2AFB1P0C5Y9 115 aa14.5□□□□□ -0.09
LIME1-207ENST00000489212 GATA1P15976 413 aaPredicted RBP14.5□□□□□ -0.09
LIME1-207ENST00000489212 UBE2G1P62253 170 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms