RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 FBLL1A6NHQ2 334 aaKnown RBP10.46□□□□□ -0.73
TRIM54-204ENST00000488321 PEX7O00628 323 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 TPT1P13693 172 aaKnown RBP10.46□□□□□ -0.73
TRIM54-204ENST00000488321 ZNF80P51504 273 aaPredicted RBP10.46□□□□□ -0.73
TRIM54-204ENST00000488321 SMUG1Q53HV7 270 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 SAPCD1Q5SSQ6 148 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 CST9LP1Q5W188 147 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 SFT2D1Q8WV19 159 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 KCNS1Q96KK3 526 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 SPXQ9BT56 116 aa10.46□□□□□ -0.73
TRIM54-204ENST00000488321 hCG_2014768A0A024R1R8 64 aa10.45□□□□□ -0.74
TRIM54-204ENST00000488321 TYMSP04818 313 aa10.45□□□□□ -0.74
TRIM54-204ENST00000488321 Q6ZNX1 250 aa10.45□□□□□ -0.74
TRIM54-204ENST00000488321 TCTE3Q8IZS6 198 aa10.45□□□□□ -0.74
TRIM54-204ENST00000488321 HIST1H2BAQ96A08 127 aa10.45□□□□□ -0.74
TRIM54-204ENST00000488321 IGHV3-16A0A0C4DH30 117 aa10.44□□□□□ -0.74
TRIM54-204ENST00000488321 PFN1P07737 140 aaKnown RBP10.44□□□□□ -0.74
TRIM54-204ENST00000488321 FAM3BP58499 235 aaPredicted RBP10.44□□□□□ -0.74
TRIM54-204ENST00000488321 ARL2-SNX15V9GYD0 113 aa10.44□□□□□ -0.74
TRIM54-204ENST00000488321 H3BNG1 76 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 PAGE4O60829 102 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 UBE2G1P62253 170 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 DPPA3Q6W0C5 159 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 Q86TA4 180 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 MBD3L1Q8WWY6 194 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 VSIG2Q96IQ7 327 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 C11orf21Q9P2W6 132 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 LINC00588Q9Y4M8 146 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 DNAH10Q8IVF4 4471 aa10.43□□□□□ -0.74
TRIM54-204ENST00000488321 TRGV4A0A0C4DH28 118 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 M0R2P5 195 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 PAX4O43316 350 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 H2AFB1P0C5Y9 115 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 SFTA3P0C7M3 94 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 LGALSLQ3ZCW2 172 aaPredicted RBP10.42□□□□□ -0.74
TRIM54-204ENST00000488321 RASL10AQ92737 203 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 PRO0255Q9UI72 69 aa10.42□□□□□ -0.74
TRIM54-204ENST00000488321 BIRC6Q9NR09 4857 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 SLAQ13239 276 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 EIF5AL1Q6IS14 154 aaKnown RBP10.41□□□□□ -0.74
TRIM54-204ENST00000488321 AKAP14Q86UN6 197 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 ZNF479Q96JC4 524 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 TCEAL7Q9BRU2 100 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 HHLA3Q9XRX5 114 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 DNAH6Q9C0G6 4158 aa10.41□□□□□ -0.74
TRIM54-204ENST00000488321 A0A096LPF7 62 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 C9JCJ5 164 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 C1QBP02746 253 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 AKR1C3P42330 323 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 FHL2Q14192 279 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 OR4C5Q8NGB2 326 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 ZNRF2Q8NHG8 242 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 FMC1Q96HJ9 113 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 ICOSQ9Y6W8 199 aa10.4□□□□□ -0.74
TRIM54-204ENST00000488321 FABP5P3A8MUU1 101 aa10.39□□□□□ -0.75
TRIM54-204ENST00000488321 CRYBA4P53673 196 aa10.39□□□□□ -0.75
TRIM54-204ENST00000488321 ESRGQ1W209 222 aa10.39□□□□□ -0.75
TRIM54-204ENST00000488321 Q6ZR54 194 aa10.39□□□□□ -0.75
TRIM54-204ENST00000488321 ZFP30Q9Y2G7 519 aa10.39□□□□□ -0.75
TRIM54-204ENST00000488321 TRAV4A0A0B4J268 109 aa10.38□□□□□ -0.75
TRIM54-204ENST00000488321 ORM1P02763 201 aa10.38□□□□□ -0.75
TRIM54-204ENST00000488321 S100A4P26447 101 aaKnown RBP10.38□□□□□ -0.75
TRIM54-204ENST00000488321 ZNF876PQ49A33 203 aa10.38□□□□□ -0.75
TRIM54-204ENST00000488321 LINC00336Q6ZUF6 198 aa10.38□□□□□ -0.75
TRIM54-204ENST00000488321 ZC2HC1AQ96GY0 325 aa10.38□□□□□ -0.75
TRIM54-204ENST00000488321 NBDYA0A0U1RRE5 68 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 M0R036 132 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 RAB5CP51148 216 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 SOHLH1Q5JUK2 328 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 SLC51BQ86UW2 128 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 PCNPQ8WW12 178 aaKnown RBP10.37□□□□□ -0.75
TRIM54-204ENST00000488321 Q9H8V8 135 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 DNAH2Q9P225 4427 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 GNG13Q9P2W3 67 aa10.37□□□□□ -0.75
TRIM54-204ENST00000488321 IGKV3D-20A0A0C4DH25 116 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 SCO2A0A1W2PP80 73 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 B4DEV8 164 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 TEX46H3BTG2 121 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 RTL8CO15255 209 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 SH2D1AO60880 128 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 LTAP01374 205 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 ASIPP42127 132 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 MRPL23Q16540 153 aaKnown RBP10.36□□□□□ -0.75
TRIM54-204ENST00000488321 FAM162BQ5T6X4 162 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 C1orf134Q5TEV5 83 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 NHLRC2Q8NBF2 726 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 C9orf85Q96MD7 179 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 MRPS16Q9Y3D3 137 aaKnown RBP10.36□□□□□ -0.75
TRIM54-204ENST00000488321 FRAS1Q86XX4 4008 aa10.36□□□□□ -0.75
TRIM54-204ENST00000488321 TRBV6-1A0A0K0K1D8 114 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 PRSS29PA6NIE9 313 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 RNASE3P12724 160 aaKnown RBP10.35□□□□□ -0.75
TRIM54-204ENST00000488321 GYPEP15421 78 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 SRIP30626 198 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 CRIP1P50238 77 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 CCL20P78556 96 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 MANBALQ9NQG1 85 aa10.35□□□□□ -0.75
TRIM54-204ENST00000488321 PGPEP1LA6NFU8 196 aa10.34□□□□□ -0.75
TRIM54-204ENST00000488321 S100A9P06702 114 aaKnown RBP10.34□□□□□ -0.75
TRIM54-204ENST00000488321 SULT1A2P50226 295 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms