RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KLLNB2CW77 178 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 SLAQ13239 276 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 CD300EQ496F6 205 aaPredicted RBP10.55□□□□□ -0.72
CUX1-209ENST00000487284 EBLN2Q6P2I7 272 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 FOXI2Q6ZQN5 318 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 WFDC9Q8NEX5 89 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 CMYA5Q8N3K9 4069 aa10.55□□□□□ -0.72
CUX1-209ENST00000487284 TRAV21A0A0B4J279 112 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 DUSP14O95147 198 aaKnown RBP10.54□□□□□ -0.72
CUX1-209ENST00000487284 IGLV1-51P01701 117 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 APCSP02743 223 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 S100A8P05109 93 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 GPX1P07203 203 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 LYZL1Q6UWQ5 148 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 FER1L6-AS1Q8NA97 138 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 BORCS7Q96B45 105 aa10.54□□□□□ -0.72
CUX1-209ENST00000487284 SPAG8Q99932 426 aaPredicted RBP10.54□□□□□ -0.72
CUX1-209ENST00000487284 OR4C46A6NHA9 309 aa10.53□□□□□ -0.72
CUX1-209ENST00000487284 KRTAP21-3Q3LHN1 58 aa10.53□□□□□ -0.72
CUX1-209ENST00000487284 Q6ZQT7 251 aa10.53□□□□□ -0.72
CUX1-209ENST00000487284 HIST3H2BBQ8N257 126 aa10.53□□□□□ -0.72
CUX1-209ENST00000487284 CNFNQ9BYD5 112 aa10.53□□□□□ -0.72
CUX1-209ENST00000487284 GRIFINA4D1Z8 144 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 A8MTW9 85 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 LEPP41159 167 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 C9orf66Q5T8R8 295 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 GFI1BQ5VTD9 330 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 TPPP3Q9BW30 176 aa10.52□□□□□ -0.72
CUX1-209ENST00000487284 SSBP4Q9BWG4 385 aaPredicted RBP10.52□□□□□ -0.72
CUX1-209ENST00000487284 F2Z2F3 143 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 J3KRW8 73 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 IGLL1P15814 213 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 RNASE4P34096 147 aaKnown RBP10.52□□□□□ -0.73
CUX1-209ENST00000487284 DEFB131AP59861 70 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 KIR3DS1Q14943 382 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 KIAA1644Q3SXP7 199 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 MAP6D1Q9H9H5 199 aa10.52□□□□□ -0.73
CUX1-209ENST00000487284 ZNF256Q9Y2P7 627 aaPredicted RBP10.52□□□□□ -0.73
CUX1-209ENST00000487284 IFITM10A6NMD0 228 aa10.51□□□□□ -0.73
CUX1-209ENST00000487284 Q0VG73 95 aa10.51□□□□□ -0.73
CUX1-209ENST00000487284 AMTNQ6UX39 209 aa10.51□□□□□ -0.73
CUX1-209ENST00000487284 ZNF493Q6ZR52 646 aa10.51□□□□□ -0.73
CUX1-209ENST00000487284 MCRIP2Q9BUT9 160 aaKnown RBP10.51□□□□□ -0.73
CUX1-209ENST00000487284 HLA-DRB4P13762 266 aa10.5□□□□□ -0.73
CUX1-209ENST00000487284 SRIP30626 198 aa10.5□□□□□ -0.73
CUX1-209ENST00000487284 INSL3P51460 131 aa10.5□□□□□ -0.73
CUX1-209ENST00000487284 TP53TG3Q9ULZ0 132 aa10.5□□□□□ -0.73
CUX1-209ENST00000487284 HLA-DRB4X5D2U9 266 aa10.5□□□□□ -0.73
CUX1-209ENST00000487284 C7orf71A4D174 169 aa10.49□□□□□ -0.73
CUX1-209ENST00000487284 OR5AL1P0C617 328 aa10.49□□□□□ -0.73
CUX1-209ENST00000487284 TSPOP30536 169 aa10.49□□□□□ -0.73
CUX1-209ENST00000487284 AKR1D1P51857 326 aa10.49□□□□□ -0.73
CUX1-209ENST00000487284 OR10J3Q5JRS4 329 aa10.49□□□□□ -0.73
CUX1-209ENST00000487284 LOC102724200A0A096LPH7 203 aaPredicted RBP10.48□□□□□ -0.73
CUX1-209ENST00000487284 KNCNA6PVL3 124 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 H3BMM0 161 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 SNAI2O43623 268 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 IGKV3-20P01619 116 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 CDKN1BP46527 198 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 ANXA2RQ3ZCQ2 193 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 PRR31Q5SQ13 230 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 DNLZQ5SXM8 178 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 OR2K2Q8NGT1 345 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 ALKBH7Q9BT30 221 aaPredicted RBP10.48□□□□□ -0.73
CUX1-209ENST00000487284 NAGKQ9UJ70 344 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 MED14OSP0DP75 135 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 NTF3P20783 257 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 ODF3L2Q3SX64 289 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 OXLD1Q5BKU9 147 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 PDZD11Q5EBL8 140 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 TMEM256Q8N2U0 113 aa10.48□□□□□ -0.73
CUX1-209ENST00000487284 MGAM2Q2M2H8 2515 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 MUC21A0A0G2JKD1 596 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 MUC21A0A140T8X8 626 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 M0R2Z0 102 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 ZNF324O75467 553 aaPredicted RBP10.47□□□□□ -0.73
CUX1-209ENST00000487284 ESDP10768 282 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 S100A2P29034 98 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 LINC00310P59036 64 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 SPINK13Q1W4C9 94 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 MUC21Q5SSG8 566 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 C18orf32Q8TCD1 76 aa10.47□□□□□ -0.73
CUX1-209ENST00000487284 IGHV4-4A0A075B6R2 117 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 TRAV12-3A0A0B4J271 114 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 WIPF1O43516 503 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 ASIPP42127 132 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 TWIST1Q15672 202 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 ZNF124Q15973 351 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 TDRG1Q3Y452 100 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 OR10AG1Q8NH19 301 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 KCNS1Q96KK3 526 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 CLUHP3Q96NS8 147 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 MUC4Q99102 2169 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 HIST1H2BLQ99880 126 aa10.46□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1BA6NDE4 496 aaKnown RBP10.45□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1EA6NEQ0 496 aaKnown RBP10.45□□□□□ -0.74
CUX1-209ENST00000487284 H3BVH4 76 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 SERF1AO75920 110 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 AMBPP02760 352 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1DP0C7P1 496 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms