RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LINC01545Q5VT33 79 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 C14orf178Q8N769 122 aaPredicted RBP8.66□□□□□ -1.02
HDAC6-228ENST00000486227 SIGLEC8Q9NYZ4 499 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 TMEM213A2RRL7 107 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 PRSS57Q6UWY2 283 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 IGF2BP2-AS1Q96M15 143 aa8.66□□□□□ -1.02
HDAC6-228ENST00000486227 C8orf86Q6ZUL3 223 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 Q8N7P7 452 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 BRWD1-AS2P59051 145 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 TOMM7Q9P0U1 55 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 IGHV7-81A0A0B4J1V7 117 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 IGHV4-38-2P0DP08 117 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 CTRLP40313 264 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 MORN5Q5VZ52 161 aa8.65□□□□□ -1.02
HDAC6-228ENST00000486227 TNFRSF6BO95407 300 aa8.65□□□□□ -1.03
HDAC6-228ENST00000486227 IGKV1-17P01599 117 aa8.65□□□□□ -1.03
HDAC6-228ENST00000486227 LINC00173Q6ZV60 143 aa8.65□□□□□ -1.03
HDAC6-228ENST00000486227 PRR25Q96S07 402 aa8.65□□□□□ -1.03
HDAC6-228ENST00000486227 K7EIM0 57 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 LTAP01374 205 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 CFAP161Q6P656 301 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 TRAV8-4A0A0B4J246 113 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 NDUFA4O00483 81 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 TAL2Q16559 108 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 ZNF843Q8N446 348 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 TNRC6AQ8NDV7 1962 aaKnown RBP8.64□□□□□ -1.03
HDAC6-228ENST00000486227 IGHV3-73A0A0B4J1V6 119 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 MRPL51Q4U2R6 128 aaKnown RBP8.64□□□□□ -1.03
HDAC6-228ENST00000486227 NAV3Q8IVL0 2385 aa8.64□□□□□ -1.03
HDAC6-228ENST00000486227 IGKV1OR2-108A0A075B7D4 117 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 RPL36AP83881 106 aaKnown RBP8.63□□□□□ -1.03
HDAC6-228ENST00000486227 PATE2Q6UY27 113 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 RPL36ALQ969Q0 106 aaKnown RBP8.63□□□□□ -1.03
HDAC6-228ENST00000486227 ERG28Q9UKR5 140 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 TP53TG3Q9ULZ0 132 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 HTTP42858 3142 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 IGLV2-23P01705 113 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 MALP21145 153 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 HLA-DMBP28068 263 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 TEX48A0A1B0GUV7 120 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 I3L2K1 104 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 ANKRD39Q53RE8 183 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 NPBQ8NG41 125 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 C2orf70A6NJV1 201 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 P0C879 139 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 DEFB130BP0DP73 79 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 DEFB130AP0DP74 79 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 DPH3P1Q9H4G8 78 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 CHD7Q9P2D1 2997 aa8.63□□□□□ -1.03
HDAC6-228ENST00000486227 H3BUA1 57 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 BLCAPP62952 87 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 CEND1Q8N111 149 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 ZC2HC1AQ96GY0 325 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 MRPL36Q9P0J6 103 aaKnown RBP8.62□□□□□ -1.03
HDAC6-228ENST00000486227 XCL2Q9UBD3 114 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 PPDPFLQ8WWR9 84 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 TMEM95Q3KNT9 176 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 IGHV3-53P01767 116 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 APOC4P55056 127 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 Q8N9W7 124 aa8.62□□□□□ -1.03
HDAC6-228ENST00000486227 A0A087WWL8 130 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 H3BMG7 143 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 ZNF48Q96MX3 618 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-228ENST00000486227 SPANXA1Q9NS26 97 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 TLN2Q9Y4G6 2542 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 SPINK13Q1W4C9 94 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 C1orf229Q6ZS94 237 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-228ENST00000486227 Q8N8P6 123 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 IGLV11-55A0A075B6I3 123 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 TRBV20-1A0A075B6N2 111 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 TRAV2A0A0B4J234 112 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 G3V4G9 280 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 K7ERJ3 54 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 ZNF876PQ49A33 203 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 DSCAMO60469 2012 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-228ENST00000486227 TEX22C9J3V5 150 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 NPYP01303 97 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 PCP2Q8IVA1 136 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 OR13C6PQ8NH95 151 aa8.61□□□□□ -1.03
HDAC6-228ENST00000486227 C19orf84I3L1E1 186 aa8.6□□□□□ -1.03
HDAC6-228ENST00000486227 DKK2Q9UBU2 259 aa8.6□□□□□ -1.03
HDAC6-228ENST00000486227 CCL24O00175 119 aa8.6□□□□□ -1.03
HDAC6-228ENST00000486227 PRRC2CQ9Y520 2896 aaKnown RBP8.6□□□□□ -1.03
HDAC6-228ENST00000486227 IGKV3D-20A0A0C4DH25 116 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 CTSGP08311 255 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 FAM167A-AS1Q96KT0 104 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 LINC00574Q9H8X3 128 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 ADARB2-AS1A8MUL3 147 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 LRRC75A-AS1Q8N1F1 130 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 RANBP2P49792 3224 aaKnown RBP8.59□□□□□ -1.03
HDAC6-228ENST00000486227 USP9YO00507 2555 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-228ENST00000486227 KMT2EQ8IZD2 1858 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 IGHV7-4-1A0A0J9YVY3 117 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 GP9P14770 177 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 C12orf74Q32Q52 190 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 ZMAT4Q9H898 229 aa8.59□□□□□ -1.03
HDAC6-228ENST00000486227 MRPL35Q9NZE8 188 aaKnown RBP8.59□□□□□ -1.03
HDAC6-228ENST00000486227 USP9XQ93008 2570 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-228ENST00000486227 DAD1P61803 113 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms