RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 F6UZH7 168 aa12.97□□□□□ -0.33
COL27A1-205ENST00000485397 K7EP13 123 aa12.97□□□□□ -0.33
COL27A1-205ENST00000485397 TYMSP04818 313 aa12.97□□□□□ -0.33
COL27A1-205ENST00000485397 CRYGDP07320 174 aa12.97□□□□□ -0.33
COL27A1-205ENST00000485397 RPL12P30050 165 aaKnown RBP12.97□□□□□ -0.33
COL27A1-205ENST00000485397 WFDC1Q9HC57 220 aa12.97□□□□□ -0.33
COL27A1-205ENST00000485397 TRAV8-1A0A0A6YYK1 113 aa12.96□□□□□ -0.33
COL27A1-205ENST00000485397 TRAV21A0A0B4J279 112 aa12.96□□□□□ -0.33
COL27A1-205ENST00000485397 Q5VSD8 79 aa12.96□□□□□ -0.33
COL27A1-205ENST00000485397 GATA1P15976 413 aaPredicted RBP12.95□□□□□ -0.34
COL27A1-205ENST00000485397 GNG5P63218 68 aa12.95□□□□□ -0.34
COL27A1-205ENST00000485397 FAM74A1Q5RGS3 127 aa12.95□□□□□ -0.34
COL27A1-205ENST00000485397 NHLRC2Q8NBF2 726 aa12.95□□□□□ -0.34
COL27A1-205ENST00000485397 TREM1Q9NP99 234 aa12.95□□□□□ -0.34
COL27A1-205ENST00000485397 HERC1Q15751 4861 aa12.95□□□□□ -0.34
COL27A1-205ENST00000485397 A6NHS1 94 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 HMGB3O15347 200 aaKnown RBP12.94□□□□□ -0.34
COL27A1-205ENST00000485397 SSNA1O43805 119 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 GCSHP23434 173 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 RAB2AP61019 212 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 ACOT6Q3I5F7 207 aaPredicted RBP12.94□□□□□ -0.34
COL27A1-205ENST00000485397 C10orf126Q8N4M7 172 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 SGK494Q96LW2 274 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 MARVELD1Q9BSK0 173 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 SDF2L1Q9HCN8 221 aa12.94□□□□□ -0.34
COL27A1-205ENST00000485397 A0A1W2PPV4 95 aa12.93□□□□□ -0.34
COL27A1-205ENST00000485397 SMR3BP02814 79 aaPredicted RBP12.93□□□□□ -0.34
COL27A1-205ENST00000485397 PET100P0DJ07 73 aa12.93□□□□□ -0.34
COL27A1-205ENST00000485397 PQLC2Q6ZP29 291 aa12.93□□□□□ -0.34
COL27A1-205ENST00000485397 FRZBQ92765 325 aa12.93□□□□□ -0.34
COL27A1-205ENST00000485397 IGHV3-38A0A0C4DH36 116 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 PPT1P50897 306 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 TIRAPP58753 221 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 HAMPP81172 84 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 SH2D6Q7Z4S9 175 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 ARL6IP6Q8N6S5 226 aa12.92□□□□□ -0.34
COL27A1-205ENST00000485397 ASB13Q8WXK3 278 aa12.91□□□□□ -0.34
COL27A1-205ENST00000485397 KCNS1Q96KK3 526 aa12.91□□□□□ -0.34
COL27A1-205ENST00000485397 LRCOL1A6NCL2 159 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 FBLL1A6NHQ2 334 aaKnown RBP12.9□□□□□ -0.34
COL27A1-205ENST00000485397 PSCAO43653 123 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 DPPA3Q6W0C5 159 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 SLC25A29Q8N8R3 303 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 OR10G9Q8NGN4 311 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 OR10G7Q8NGN6 311 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 C11orf21Q9P2W6 132 aa12.9□□□□□ -0.34
COL27A1-205ENST00000485397 VPS13BQ7Z7G8 4022 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 IGHV3-73A0A0B4J1V6 119 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 RS1O15537 224 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 ZNF80P51504 273 aaPredicted RBP12.89□□□□□ -0.35
COL27A1-205ENST00000485397 ZNF876PQ49A33 203 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 LINC01556Q5JQF7 62 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 CFAP126Q5VTH2 177 aa12.89□□□□□ -0.35
COL27A1-205ENST00000485397 IGLV5-52A0A0A0MRZ9 124 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 IBA57-AS1B1ANH7 110 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 PFN1P07737 140 aaKnown RBP12.88□□□□□ -0.35
COL27A1-205ENST00000485397 ARL14EPLP0DKL9 152 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 OR10J3Q5JRS4 329 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 Q9HAA7 133 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 DNAH8Q96JB1 4490 aa12.88□□□□□ -0.35
COL27A1-205ENST00000485397 TRAV8-6A0A0B4J262 113 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 IGHV3-30P01768 117 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 IGHV3-33P01772 117 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 IGHV3-30-3P0DP02 117 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 IGHV3-30-5P0DP03 117 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 TMEM75Q8N9X5 138 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 PRADC1Q9BSG0 188 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 NDFIP1Q9BT67 221 aa12.87□□□□□ -0.35
COL27A1-205ENST00000485397 TCRAP04437 139 aa12.86□□□□□ -0.35
COL27A1-205ENST00000485397 STAG3L2P0CL84 134 aa12.86□□□□□ -0.35
COL27A1-205ENST00000485397 STAG3L3P0CL85 134 aa12.86□□□□□ -0.35
COL27A1-205ENST00000485397 CDC34P49427 236 aaPredicted RBP12.86□□□□□ -0.35
COL27A1-205ENST00000485397 RHOHQ15669 191 aa12.86□□□□□ -0.35
COL27A1-205ENST00000485397 PSG8Q9UQ74 426 aa12.86□□□□□ -0.35
COL27A1-205ENST00000485397 TRBV6-4A0A1B0GX49 114 aa12.85□□□□□ -0.35
COL27A1-205ENST00000485397 PGPEP1LA6NFU8 196 aa12.85□□□□□ -0.35
COL27A1-205ENST00000485397 GCGP01275 180 aa12.85□□□□□ -0.35
COL27A1-205ENST00000485397 C5orf17Q8NAS9 161 aa12.85□□□□□ -0.35
COL27A1-205ENST00000485397 NTN5Q8WTR8 489 aaPredicted RBP12.85□□□□□ -0.35
COL27A1-205ENST00000485397 C9orf85Q96MD7 179 aa12.85□□□□□ -0.35
COL27A1-205ENST00000485397 DMBT1Q9UGM3 2413 aaPredicted RBP12.84□□□□□ -0.35
COL27A1-205ENST00000485397 SERTM2A0A1B0GWG4 89 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 TAAR5O14804 337 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 CIDEAO60543 219 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 IGLV2-11P01706 119 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 GCHFRP30047 84 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 DEFA1P59665 94 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 DEFA3P59666 94 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 ZNF506Q5JVG8 444 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 LELP1Q5T871 98 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 Q8N814 137 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 HSD17B11Q8NBQ5 300 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 RAB24Q969Q5 203 aa12.84□□□□□ -0.35
COL27A1-205ENST00000485397 FLG2Q5D862 2391 aaPredicted RBP12.84□□□□□ -0.35
COL27A1-205ENST00000485397 PRNTQ86SH4 94 aa12.83□□□□□ -0.36
COL27A1-205ENST00000485397 OR2G3Q8NGZ4 309 aa12.83□□□□□ -0.36
COL27A1-205ENST00000485397 SUN5Q8TC36 379 aa12.83□□□□□ -0.36
COL27A1-205ENST00000485397 TMEM70Q9BUB7 260 aa12.83□□□□□ -0.36
COL27A1-205ENST00000485397 FAM229AH3BQW9 127 aa12.82□□□□□ -0.36
COL27A1-205ENST00000485397 RNASE3P12724 160 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms