RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PRAC2D3DTV9 90 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 EFNA4P52798 201 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 AGRNO00468 2067 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 ZZEF1O43149 2961 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 INSL3P51460 131 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 PRR30Q53SZ7 412 aaPredicted RBP10.23□□□□□ -0.77
USP40-214ENST00000483519 OR11H6Q8NGC7 330 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 DLX4Q92988 240 aaPredicted RBP10.23□□□□□ -0.77
USP40-214ENST00000483519 GEMIN7Q9H840 131 aaKnown RBP10.23□□□□□ -0.77
USP40-214ENST00000483519 MRPL16Q9NX20 251 aaKnown RBP10.23□□□□□ -0.77
USP40-214ENST00000483519 ATP5G2Q06055 141 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 FOXI1Q12951 378 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 ORMDL2Q53FV1 153 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 SPANXN1Q5VSR9 72 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 MORN3Q6PF18 240 aaPredicted RBP10.23□□□□□ -0.77
USP40-214ENST00000483519 SMIM2Q9BVW6 85 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 CYSLTR1Q9Y271 337 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 IGSF10Q6WRI0 2623 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 PKDREJQ9NTG1 2253 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 ZFYVE26Q68DK2 2539 aa10.23□□□□□ -0.77
USP40-214ENST00000483519 IGHV7-4-1A0A0J9YVY3 117 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 LYNX1G3V0Z9 82 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 PRB1P04280 392 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 LYNX1P0DP58 116 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 SLC25A16P16260 332 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 IGHV4-4A0A075B6R2 117 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 NDPQ00604 133 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 KLRD1Q13241 179 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 TMEM78Q5T7P6 136 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 RNF182Q8N6D2 247 aa10.22□□□□□ -0.77
USP40-214ENST00000483519 RP1L1Q8IWN7 2480 aaPredicted RBP10.22□□□□□ -0.77
USP40-214ENST00000483519 CFAP126Q5VTH2 177 aa10.21□□□□□ -0.77
USP40-214ENST00000483519 LY6G5BQ8NDX9 201 aa10.21□□□□□ -0.77
USP40-214ENST00000483519 SCGB3A1Q96QR1 104 aa10.21□□□□□ -0.77
USP40-214ENST00000483519 C20orf78Q9BR46 151 aa10.21□□□□□ -0.77
USP40-214ENST00000483519 C11orf21Q9P2W6 132 aa10.21□□□□□ -0.77
USP40-214ENST00000483519 LGALS1P09382 135 aaKnown RBP10.21□□□□□ -0.78
USP40-214ENST00000483519 LYRM7Q5U5X0 104 aa10.21□□□□□ -0.78
USP40-214ENST00000483519 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.21□□□□□ -0.78
USP40-214ENST00000483519 IGHV3OR16-8A0A075B7F1 116 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 SYT8Q8NBV8 401 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 TOMM6Q96B49 74 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 AGPAT4-IT1Q9H0P7 198 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 TRAV25A0A0B4J276 109 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 BUB3O43684 328 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 C8orf86Q6ZUL3 223 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 NEXN-AS1Q8NBZ9 246 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 TNFRSF18Q9Y5U5 241 aa10.2□□□□□ -0.78
USP40-214ENST00000483519 CFAP47Q6ZTR5 3102 aa10.19□□□□□ -0.78
USP40-214ENST00000483519 IGHV3-35A0A0C4DH35 117 aa10.19□□□□□ -0.78
USP40-214ENST00000483519 ZNF418Q8TF45 676 aaPredicted RBP10.19□□□□□ -0.78
USP40-214ENST00000483519 MRPL53Q96EL3 112 aaKnown RBP10.19□□□□□ -0.78
USP40-214ENST00000483519 SCGB1D4Q6XE38 83 aa10.19□□□□□ -0.78
USP40-214ENST00000483519 PRADC1Q9BSG0 188 aa10.19□□□□□ -0.78
USP40-214ENST00000483519 KLK15Q9H2R5 256 aa10.19□□□□□ -0.78
USP40-214ENST00000483519 SMG1Q96Q15 3661 aaKnown RBP10.18□□□□□ -0.78
USP40-214ENST00000483519 ZNF815PA8K554 130 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 ODF3BA8MYP8 253 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 CD3EP07766 207 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 LCNL1Q6ZST4 164 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 ZFAND3Q9H8U3 227 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 LINC01549A6NIU2 74 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 SPINK8P0C7L1 97 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 CRYBA4P53673 196 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 SUMO2P61956 95 aaKnown RBP10.18□□□□□ -0.78
USP40-214ENST00000483519 CDIP1Q9H305 208 aa10.18□□□□□ -0.78
USP40-214ENST00000483519 TRAV26-1A0A087WT03 109 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 LOC107984156A0A0G2JMH3 177 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 M0R1W7 72 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 PSMB2P49721 201 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 SMCPP49901 116 aaPredicted RBP10.17□□□□□ -0.78
USP40-214ENST00000483519 UBE2D1P51668 147 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 SRSF9Q13242 221 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP40-214ENST00000483519 ARL17AQ8IVW1 177 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 FAM110AQ9BQ89 295 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 H3BVH4 76 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 C9orf47Q6ZRZ4 202 aa10.17□□□□□ -0.78
USP40-214ENST00000483519 TSPAN13O95857 204 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 HERV-K104P63124 156 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 C15orf32Q32M92 178 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 FBXL19-AS1Q494R0 122 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 BAALCQ8WXS3 180 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 LAMA5O15230 3695 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 NFE4Q86UQ8 179 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 Q8N6K4 173 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 PPDPFLQ8WWR9 84 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 VKORC1Q9BQB6 163 aa10.16□□□□□ -0.78
USP40-214ENST00000483519 CHD6Q8TD26 2715 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 PRTN3P24158 256 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 UBE2D3P61077 147 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 UBE2D2P62837 147 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 C2orf66Q6UXQ4 117 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 IGHV7-81A0A0B4J1V7 117 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 IGHV3-66A0A0C4DH42 116 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.15□□□□□ -0.78
USP40-214ENST00000483519 OOSP1A8MZH6 123 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 GNLYP22749 145 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 Q6ZUT4 128 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 POLEQ07864 2286 aa10.15□□□□□ -0.78
USP40-214ENST00000483519 TRAV8-2A0A0B4J237 113 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms