RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 APC2O95996 2303 aa14.45□□□□□ -0.1
CCDC88B-207ENST00000479965 IGLV11-55A0A075B6I3 123 aa14.45□□□□□ -0.1
CCDC88B-207ENST00000479965 TEN1Q86WV5 123 aa14.45□□□□□ -0.1
CCDC88B-207ENST00000479965 ABCA4P78363 2273 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 FAM90A27PA6NNH2 459 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 B5MCH6 92 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 TCL1BO95988 128 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 AGPAT4-IT1Q9H0P7 198 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 CTSGP08311 255 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 NDPQ00604 133 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 A8MWV9 139 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 PRTN3P24158 256 aa14.44□□□□□ -0.1
CCDC88B-207ENST00000479965 PIEZO2Q9H5I5 2752 aa14.43□□□□□ -0.1
CCDC88B-207ENST00000479965 TEX29Q8N6K0 151 aa14.43□□□□□ -0.1
CCDC88B-207ENST00000479965 RPL39LQ96EH5 51 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-207ENST00000479965 IGHV7-4-1A0A0J9YVY3 117 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 ARL3P36405 182 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 SRSF2Q01130 221 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 ZFAND6Q6FIF0 208 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 TRAV12-1A0A0B4J245 112 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 MGPP08493 103 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 C2orf66Q6UXQ4 117 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 LRBAP50851 2863 aa14.42□□□□□ -0.1
CCDC88B-207ENST00000479965 H7C2G1 150 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 C5orf64Q2M2E5 130 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 ANKRD29Q8N6D5 301 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 NEXN-AS1Q8NBZ9 246 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 ZNF688P0C7X2 276 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 BAALCQ8WXS3 180 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 RNF5Q99942 180 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 ORMDL2Q53FV1 153 aa14.41□□□□□ -0.1
CCDC88B-207ENST00000479965 UBE2D1P51668 147 aa14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 SUMO2P61956 95 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 LYRM7Q5U5X0 104 aa14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 RASL10AQ92737 203 aa14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 PSMG3-AS1Q96PY0 264 aa14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 C14orf178Q8N769 122 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 DPM3Q9P2X0 92 aa14.4□□□□□ -0.1
CCDC88B-207ENST00000479965 NDUFA11Q86Y39 141 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 RAX2Q96IS3 184 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 SCGB2A1O75556 95 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 S100A4P26447 101 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 TRAV8-2A0A0B4J237 113 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 LINC01619G3V211 115 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 UBE2D3P61077 147 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 UBE2D2P62837 147 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 TOMM6Q96B49 74 aa14.39□□□□□ -0.11
CCDC88B-207ENST00000479965 TRBV20-1A0A075B6N2 111 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 OR11H6Q8NGC7 330 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 A0A0G2JNJ9 132 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 E7EQL1 145 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 LY6LH3BQJ8 138 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 GAGE5Q13069 117 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 GAGE6Q13070 117 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 Q6ZS92 163 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 Q9UFV3 132 aa14.38□□□□□ -0.11
CCDC88B-207ENST00000479965 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.37□□□□□ -0.11
CCDC88B-207ENST00000479965 CLEC3BP05452 202 aa14.37□□□□□ -0.11
CCDC88B-207ENST00000479965 CD7P09564 240 aa14.37□□□□□ -0.11
CCDC88B-207ENST00000479965 ZNF672Q499Z4 452 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-207ENST00000479965 Q6ZS46 218 aa14.37□□□□□ -0.11
CCDC88B-207ENST00000479965 C9JAW5 83 aa14.36□□□□□ -0.11
CCDC88B-207ENST00000479965 SLC50A1Q9BRV3 221 aa14.36□□□□□ -0.11
CCDC88B-207ENST00000479965 ACACAQ13085 2346 aa14.36□□□□□ -0.11
CCDC88B-207ENST00000479965 LY6HO94772 140 aa14.36□□□□□ -0.11
CCDC88B-207ENST00000479965 ECSCRQ19T08 205 aa14.36□□□□□ -0.11
CCDC88B-207ENST00000479965 BUB3O43684 328 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 IGF1P05019 195 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 COLQQ9Y215 455 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 MSRB2Q9Y3D2 182 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 DUSP14O95147 198 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 C15orf32Q32M92 178 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 TMEM170BQ5T4T1 132 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 C11orf86A6NJI1 115 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 CFC1BP0CG36 223 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 CFC1P0CG37 223 aa14.35□□□□□ -0.11
CCDC88B-207ENST00000479965 TRPT1Q86TN4 253 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-207ENST00000479965 SPTBN1Q01082 2364 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-207ENST00000479965 RELNP78509 3460 aa14.34□□□□□ -0.11
CCDC88B-207ENST00000479965 DCHS2Q6V1P9 2916 aa14.33□□□□□ -0.11
CCDC88B-207ENST00000479965 A0A0J9YY99 117 aa14.33□□□□□ -0.11
CCDC88B-207ENST00000479965 SLC25A20O43772 301 aa14.33□□□□□ -0.11
CCDC88B-207ENST00000479965 CRIP2P52943 208 aaPredicted RBP14.33□□□□□ -0.11
CCDC88B-207ENST00000479965 COX6B1P14854 86 aa14.33□□□□□ -0.12
CCDC88B-207ENST00000479965 CLEC19AQ6UXS0 136 aa14.33□□□□□ -0.12
CCDC88B-207ENST00000479965 FAM57AQ8TBR7 257 aa14.33□□□□□ -0.12
CCDC88B-207ENST00000479965 PHLDA3Q9Y5J5 127 aa14.33□□□□□ -0.12
CCDC88B-207ENST00000479965 ASH1LQ9NR48 2969 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-207ENST00000479965 TMEM262E9PQX1 116 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 SNCGO76070 127 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 HERVK_113P61574 105 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 GAGE2BQ13066 116 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 GAGE2EQ4V326 116 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 PRR9Q5T870 116 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 NPBQ8NG41 125 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 VCX2Q9H322 139 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 GAGE2DQ9UEU5 116 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 C10orf126Q8N4M7 172 aa14.32□□□□□ -0.12
CCDC88B-207ENST00000479965 CUL9Q8IWT3 2517 aa14.31□□□□□ -0.12
CCDC88B-207ENST00000479965 RBAKDNA6NC62 111 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms