RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SHANK2-AS3Q9BTD1 123 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 ZNF331Q9NQX6 463 aaPredicted RBP5.02□□□□□ -1.61
USP54-211ENST00000474929 PXMP4Q9Y6I8 212 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 LOC100131303A0A0U1RQF7 123 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 FAM25EA8MYX2 175 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 USP17L23D6RBM5 183 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 H3BP45 60 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 SYNGR2O43760 224 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 SCGB1D2O95969 90 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 NMBP08949 121 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 CT45A10P0DMU9 189 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 SLC25A6P12236 298 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 RAB11AP62491 216 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 ID3Q02535 119 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 IAH1Q2TAA2 248 aaPredicted RBP5.01□□□□□ -1.61
USP54-211ENST00000474929 CLRN3Q8NCR9 226 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 GTSF1Q8WW33 167 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 MARVELD1Q9BSK0 173 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 C20orf85Q9H1P6 137 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 NUDT15Q9NV35 164 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 HIGD1AQ9Y241 93 aa5.01□□□□□ -1.61
USP54-211ENST00000474929 TRBV6-4A0A1B0GX49 114 aa5□□□□□ -1.61
USP54-211ENST00000474929 PGPA6NDG6 321 aa5□□□□□ -1.61
USP54-211ENST00000474929 C5orf51A6NDU8 294 aa5□□□□□ -1.61
USP54-211ENST00000474929 SSSCA1O60232 199 aa5□□□□□ -1.61
USP54-211ENST00000474929 CRPP02741 224 aa5□□□□□ -1.61
USP54-211ENST00000474929 GATA1P15976 413 aaPredicted RBP5□□□□□ -1.61
USP54-211ENST00000474929 RPP30P78346 268 aaKnown RBP5□□□□□ -1.61
USP54-211ENST00000474929 OPCMLQ14982 345 aa5□□□□□ -1.61
USP54-211ENST00000474929 ZFP69Q49AA0 526 aa5□□□□□ -1.61
USP54-211ENST00000474929 NRARPQ7Z6K4 114 aa5□□□□□ -1.61
USP54-211ENST00000474929 ENKURQ8TC29 256 aa5□□□□□ -1.61
USP54-211ENST00000474929 MITD1Q8WV92 249 aa5□□□□□ -1.61
USP54-211ENST00000474929 UBE2WQ96B02 151 aa5□□□□□ -1.61
USP54-211ENST00000474929 CIB3Q96Q77 187 aaPredicted RBP5□□□□□ -1.61
USP54-211ENST00000474929 PSENENQ9NZ42 101 aa5□□□□□ -1.61
USP54-211ENST00000474929 STRAPQ9Y3F4 350 aaKnown RBP5□□□□□ -1.61
USP54-211ENST00000474929 TRGV11A0A075B6L2 103 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 A0A087WX48 190 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 FBLL1A6NHQ2 334 aaKnown RBP4.99□□□□□ -1.61
USP54-211ENST00000474929 CNBPP62633 177 aaKnown RBP4.99□□□□□ -1.61
USP54-211ENST00000474929 SRSF9Q13242 221 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP54-211ENST00000474929 Q6ZRP5 223 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 ACOT7LQ6ZUV0 252 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 NIT1Q86X76 327 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 Q8N3U1 123 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 C12orf45Q8N5I9 185 aaPredicted RBP4.99□□□□□ -1.61
USP54-211ENST00000474929 ASB13Q8WXK3 278 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 HYLS1Q96M11 299 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 AP5S1Q9NUS5 200 aa4.99□□□□□ -1.61
USP54-211ENST00000474929 TMA7Q9Y2S6 64 aaKnown RBP4.99□□□□□ -1.61
USP54-211ENST00000474929 SMCO3A2RU48 225 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 HYPMO75409 117 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 MBPP02686 304 aaPredicted RBP4.98□□□□□ -1.61
USP54-211ENST00000474929 GPX1P07203 203 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 PRSS1P07477 247 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 METTL15P1P0C7V9 234 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 CRISP2P16562 243 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 RRAS2P62070 204 aaPredicted RBP4.98□□□□□ -1.61
USP54-211ENST00000474929 BTN1A1Q13410 526 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 MRPL53Q96EL3 112 aaKnown RBP4.98□□□□□ -1.61
USP54-211ENST00000474929 SMIM8Q96KF7 97 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 SLC39A9Q9NUM3 307 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 KLK12Q9UKR0 248 aa4.98□□□□□ -1.61
USP54-211ENST00000474929 LSM5Q9Y4Y9 91 aaKnown RBP4.98□□□□□ -1.61
USP54-211ENST00000474929 C7orf66A4D0T2 115 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 PMS2P5A8MQ11 134 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 INMT-MINDY4F8WBC2 141 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 L7N2F9 121 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 SIX6O95475 246 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 HLA-DQA1P01909 254 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 IL5P05113 134 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 RNASE4P34096 147 aaKnown RBP4.97□□□□□ -1.61
USP54-211ENST00000474929 VAMP2P63027 116 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 AKR1C1Q04828 323 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 TMEM182Q6ZP80 229 aaPredicted RBP4.97□□□□□ -1.61
USP54-211ENST00000474929 BPIFA4PQ86YQ2 179 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 SLC25A29Q8N8R3 303 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 LINC00477Q96M19 166 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 ATP5SQ99766 215 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 TP53TG3Q9ULZ0 132 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 PKIGQ9Y2B9 76 aa4.97□□□□□ -1.61
USP54-211ENST00000474929 IGLV1-50A0A075B6I6 118 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 FAM24AA6NFZ4 105 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 PRSS46E5RG02 174 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 K7EPK0 472 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 M0R2P5 195 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 OR5G3P0C626 314 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 CHTF8P0CG12 524 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 CFC1BP0CG36 223 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 MGST1P10620 155 aaKnown RBP4.96□□□□□ -1.62
USP54-211ENST00000474929 PLP1P60201 277 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 S100A10P60903 97 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 SELENOTP62341 195 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 IFITM2Q01629 132 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 ARL16Q0P5N6 197 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 TMEM183BQ1AE95 376 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 TMEM14EPQ6UXP3 125 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 TMEM183AQ8IXX5 376 aa4.96□□□□□ -1.62
USP54-211ENST00000474929 CYB561D1Q8N8Q1 229 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms