RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.72□□□□□ -1.651e-6■■■■□ 23.2
HERC4-209ENST00000473533 IGHV7-81A0A0B4J1V7 117 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 H3BMG7 143 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 ATP5G2Q06055 141 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 TCTEX1D4Q5JR98 221 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 Q71RC1 249 aaPredicted RBP4.72□□□□□ -1.65
HERC4-209ENST00000473533 MSRB1Q9NZV6 116 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 S4R3C0 116 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 TRBV7-3A0A075B6L6 115 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 IGKV3D-20A0A0C4DH25 116 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 IGHG4P01861 327 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 AZU1P20160 251 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 ERCC8Q13216 396 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 SCGB1D4Q6XE38 83 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 TMEM141Q96I45 108 aa4.71□□□□□ -1.65
HERC4-209ENST00000473533 IGHV7-4-1A0A0J9YVY3 117 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 UBE2E1P51965 193 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 C8orf86Q6ZUL3 223 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 Q8N9W7 124 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 CYSLTR1Q9Y271 337 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 PHLDA3Q9Y5J5 127 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 TSSC4Q9Y5U2 329 aaPredicted RBP4.71□□□□□ -1.66
HERC4-209ENST00000473533 LYNX1G3V0Z9 82 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 APOMO95445 188 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 LYNX1P0DP58 116 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 SRSF9Q13242 221 aaKnown RBP eCLIP4.71□□□□□ -1.662e-8■■■□□ 15.1
HERC4-209ENST00000473533 MRPL16Q9NX20 251 aaKnown RBP4.71□□□□□ -1.66
HERC4-209ENST00000473533 U3KQE9 123 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 PLXNB1O43157 2135 aa4.71□□□□□ -1.66
HERC4-209ENST00000473533 TMEM262E9PQX1 116 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 IGHV3-23P01764 117 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 NDPQ00604 133 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 FOXE3Q13461 319 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 ECSCRQ19T08 205 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 NEXN-AS1Q8NBZ9 246 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 SPOCK3Q9BQ16 436 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 C1QTNF4Q9BXJ3 329 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 ZGRF1Q86YA3 2104 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 H3BUA1 57 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 K7ERJ3 54 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 KLRD1Q13241 179 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 ZNF815PA8K554 130 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 H3BVH4 76 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 HLA-DMBP28068 263 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 DLX1P56177 255 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 C2orf66Q6UXQ4 117 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 CLEC19AQ6UXS0 136 aa4.7□□□□□ -1.66
HERC4-209ENST00000473533 TRGV3P03979 118 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 PPIFP30405 207 aaKnown RBP4.69□□□□□ -1.66
HERC4-209ENST00000473533 Q8NA96 180 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 KIR2DL4Q99706 377 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 MSRB2Q9Y3D2 182 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 CENPEQ02224 2701 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 PRAC2D3DTV9 90 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 NDUFA4O00483 81 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 BRI3O95415 125 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 SMAGPQ0VAQ4 97 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 WFDC2Q14508 124 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 LINC01560Q8TB33 94 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 PPDPFLQ8WWR9 84 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 PRADC1Q9BSG0 188 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 GTSF1LQ9H1H1 148 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 PGPEP1Q9NXJ5 209 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 FAM90A27PA6NNH2 459 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 M0QXV9 152 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 ATP6V0E1O15342 81 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 LGALS1P09382 135 aaKnown RBP4.69□□□□□ -1.66
HERC4-209ENST00000473533 GATA1P15976 413 aaPredicted RBP4.69□□□□□ -1.66
HERC4-209ENST00000473533 CRIP2P52943 208 aaPredicted RBP4.69□□□□□ -1.66
HERC4-209ENST00000473533 PRB3Q04118 309 aaPredicted RBP4.69□□□□□ -1.66
HERC4-209ENST00000473533 ETDBQ3ZM63 59 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 IGFL4Q6B9Z1 124 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 RNF182Q8N6D2 247 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 USMG5Q96IX5 58 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 TIMM17AQ99595 171 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 SIRPDQ9H106 197 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 NCOR2Q9Y618 2525 aa4.69□□□□□ -1.66
HERC4-209ENST00000473533 TRAV8-2A0A0B4J237 113 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 VCYO14598 125 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 ID1P41134 155 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 PMVKQ15126 192 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 MAPKAPK5-AS1Q8N8E1 139 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 GLMPQ8WWB7 406 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 BAALCQ8WXS3 180 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 SPAG8Q99932 426 aaPredicted RBP4.68□□□□□ -1.66
HERC4-209ENST00000473533 SPANXA1Q9NS26 97 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 MOB4Q9Y3A3 225 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 LRBAP50851 2863 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 CLPSL1A2RUU4 121 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 MGPP08493 103 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 EFNA4P52798 201 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 FOXI1Q12951 378 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 C11orf71Q6IPW1 123 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 ZNF575Q86XF7 245 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 POM121L12Q8N7R1 296 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 ITLN2Q8WWU7 325 aaPredicted RBP4.68□□□□□ -1.66
HERC4-209ENST00000473533 SONP18583 2426 aaKnown RBP4.68□□□□□ -1.66
HERC4-209ENST00000473533 CHD8Q9HCK8 2581 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 IGHV4OR15-8A0A075B7B6 117 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 A0A087WW49 117 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms