RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PSMG3Q9BT73 122 aaPredicted RBP13.46□□□□□ -0.25
COL9A3-210ENST00000472880 PGPEP1Q9NXJ5 209 aa13.46□□□□□ -0.25
COL9A3-210ENST00000472880 DNAH5Q8TE73 4624 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 A0A1W2PPV4 95 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 PGPA6NDG6 321 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 ATP6V0CP27449 155 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 OR10G9Q8NGN4 311 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 OR10G7Q8NGN6 311 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 TXNDC17Q9BRA2 123 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 TNFRSF18Q9Y5U5 241 aa13.45□□□□□ -0.26
COL9A3-210ENST00000472880 TRAV4A0A0B4J268 109 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 C9JCJ5 164 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 TDRG1Q3Y452 100 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 CDPF1Q6NVV7 123 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 PQLC2Q6ZP29 291 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 GOLT1AQ6ZVE7 132 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 WFDC10BQ8IUB3 73 aa13.44□□□□□ -0.26
COL9A3-210ENST00000472880 TRAV21A0A0B4J279 112 aa13.43□□□□□ -0.26
COL9A3-210ENST00000472880 K7EP13 123 aa13.43□□□□□ -0.26
COL9A3-210ENST00000472880 EVI2AP22794 236 aa13.43□□□□□ -0.26
COL9A3-210ENST00000472880 RPL7L1Q6DKI1 246 aaKnown RBP13.43□□□□□ -0.26
COL9A3-210ENST00000472880 OR4C5Q8NGB2 326 aa13.43□□□□□ -0.26
COL9A3-210ENST00000472880 SH3BGRL3Q9H299 93 aa13.43□□□□□ -0.26
COL9A3-210ENST00000472880 F6UZH7 168 aa13.42□□□□□ -0.26
COL9A3-210ENST00000472880 M0R2P5 195 aa13.42□□□□□ -0.26
COL9A3-210ENST00000472880 SERF2P84101 59 aa13.42□□□□□ -0.26
COL9A3-210ENST00000472880 MSRB1Q9NZV6 116 aa13.42□□□□□ -0.26
COL9A3-210ENST00000472880 BORCS7-ASMTA0A0B4J1R7 106 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 IGHV3-16A0A0C4DH30 117 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 HMGB3O15347 200 aaKnown RBP13.41□□□□□ -0.26
COL9A3-210ENST00000472880 DNAH10OSP0CZ25 163 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 FUSP35637 526 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL9A3-210ENST00000472880 CDC34P49427 236 aaPredicted RBP13.41□□□□□ -0.26
COL9A3-210ENST00000472880 ARL6IP6Q8N6S5 226 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 SDF2L1Q9HCN8 221 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 TREM1Q9NP99 234 aa13.41□□□□□ -0.26
COL9A3-210ENST00000472880 A0A087WTM6 91 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 TRAV8-1A0A0A6YYK1 113 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 SMLR1H3BR10 107 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 ARPC5O15511 151 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 GNRH2O43555 120 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 MBP02144 154 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 TYMSP04818 313 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 KCNS1Q96KK3 526 aa13.4□□□□□ -0.26
COL9A3-210ENST00000472880 STAG3L2P0CL84 134 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 STAG3L3P0CL85 134 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 GNG5P63218 68 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 SH2D6Q7Z4S9 175 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 C10orf126Q8N4M7 172 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 NHLRC2Q8NBF2 726 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 NDFIP1Q9BT67 221 aa13.39□□□□□ -0.27
COL9A3-210ENST00000472880 EPM2AB3EWF7 344 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 CRYGDP07320 174 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 ARL14EPLP0DKL9 152 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 PPT1P50897 306 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 RAB24Q969Q5 203 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 TVP23CQ96ET8 276 aa13.38□□□□□ -0.27
COL9A3-210ENST00000472880 LOC100131303A0A0U1RQF7 123 aa13.37□□□□□ -0.27
COL9A3-210ENST00000472880 TAAR5O14804 337 aa13.37□□□□□ -0.27
COL9A3-210ENST00000472880 SERTM2A0A1B0GWG4 89 aa13.36□□□□□ -0.27
COL9A3-210ENST00000472880 GATA1P15976 413 aaPredicted RBP13.36□□□□□ -0.27
COL9A3-210ENST00000472880 ACTR3CQ9C0K3 210 aaPredicted RBP13.36□□□□□ -0.27
COL9A3-210ENST00000472880 CYTL1Q9NRR1 136 aa13.36□□□□□ -0.27
COL9A3-210ENST00000472880 FBLL1A6NHQ2 334 aaKnown RBP13.35□□□□□ -0.27
COL9A3-210ENST00000472880 C5orf17Q8NAS9 161 aa13.35□□□□□ -0.27
COL9A3-210ENST00000472880 SUN5Q8TC36 379 aa13.35□□□□□ -0.27
COL9A3-210ENST00000472880 SGK494Q96LW2 274 aa13.35□□□□□ -0.27
COL9A3-210ENST00000472880 K7EQM0 130 aa13.34□□□□□ -0.27
COL9A3-210ENST00000472880 GCHFRP30047 84 aa13.34□□□□□ -0.27
COL9A3-210ENST00000472880 TIRAPP58753 221 aa13.34□□□□□ -0.27
COL9A3-210ENST00000472880 ZNF345Q14585 488 aa13.34□□□□□ -0.27
COL9A3-210ENST00000472880 OR11H4Q8NGC9 324 aa13.34□□□□□ -0.27
COL9A3-210ENST00000472880 IGHV3-38A0A0C4DH36 116 aa13.33□□□□□ -0.28
COL9A3-210ENST00000472880 CXorf1O96002 111 aa13.33□□□□□ -0.28
COL9A3-210ENST00000472880 TCRAP04437 139 aa13.33□□□□□ -0.28
COL9A3-210ENST00000472880 ZNF876PQ49A33 203 aa13.33□□□□□ -0.28
COL9A3-210ENST00000472880 KCNRGQ8N5I3 272 aa13.33□□□□□ -0.28
COL9A3-210ENST00000472880 HMSDA8MTL9 139 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 PSCAO43653 123 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 PFN1P07737 140 aaKnown RBP13.32□□□□□ -0.28
COL9A3-210ENST00000472880 XGP55808 180 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 KRTAP10-1P60331 282 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 RHOHQ15669 191 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 ZNF726P1Q15940 193 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 ZFP69Q49AA0 526 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 PRADC1Q9BSG0 188 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 TMEM167BQ9NRX6 74 aa13.32□□□□□ -0.28
COL9A3-210ENST00000472880 TRAV8-6A0A0B4J262 113 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 CTXND1A0A1B0GTU2 59 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 CIDEAO60543 219 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 GCGP01275 180 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 LINC01556Q5JQF7 62 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 AKR1C8PQ5T2L2 129 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 SLC25A29Q8N8R3 303 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 PSG8Q9UQ74 426 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 BOLA1Q9Y3E2 137 aa13.31□□□□□ -0.28
COL9A3-210ENST00000472880 RS1O15537 224 aa13.3□□□□□ -0.28
COL9A3-210ENST00000472880 GCSHP23434 173 aa13.3□□□□□ -0.28
COL9A3-210ENST00000472880 ZNF80P51504 273 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-210ENST00000472880 OR10J3Q5JRS4 329 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms