RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CDK12	Q9NYV4	1490 aa	Predicted RBP	0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	MAST4	O15021	2626 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	LOC101927531	A0A1B0GV80	90 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	CDC42EP2	O14613	210 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	TPST1	O60507	370 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	S100G	P29377	79 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	RPS28	P62857	69 aa	Known RBP	0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	TMEM35B	Q8NCS4	154 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	OTOS	Q8NHW6	89 aa		0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	SKA2	Q8WVK7	121 aa	Predicted RBP	0.29	□□□□□ -2.36
PTCD3-209	ENST00000472044	LRP5	O75197	1615 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	SYNE1	Q8NF91	8797 aa	Known RBP	0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044		A0A0G2JMM0	328 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	CKS2	P33552	79 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	IDO2	Q6ZQW0	420 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	OR4S1	Q8NGB4	309 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	TSKU	Q8WUA8	353 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	SELENOS	Q9BQE4	189 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	NDUFAF1	Q9Y375	327 aa		0.28	□□□□□ -2.36
PTCD3-209	ENST00000472044	OVOS2	A0A0G2JMS6	1433 aa		0.28	□□□□□ -2.37
PTCD3-209	ENST00000472044	TANC1	Q9C0D5	1861 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	IGHV1-24	A0A0C4DH33	117 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	PNMA8C	A0A1B0GUJ8	204 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	TSTD3	H0UI37	97 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	IGKC	P01834	107 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	SLC25A5	P05141	298 aa	Known RBP	0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	ADCYAP1	P18509	176 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	ZNF56	Q15929	161 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	ZCCHC6	Q5VYS8	1495 aa	Known RBP	0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	ARAP1	Q96P48	1450 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	KDM5C	P41229	1560 aa		0.27	□□□□□ -2.37
PTCD3-209	ENST00000472044	FAT4	Q6V0I7	4981 aa		0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044	MDN1	Q9NU22	5596 aa		0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044		J3KT08	172 aa		0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044		Q5XG85	94 aa		0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044	METTL1	Q9UBP6	276 aa	Known RBP	0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044	BLM	P54132	1417 aa	Predicted RBP	0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044	ARHGAP31	Q2M1Z3	1444 aa		0.26	□□□□□ -2.37
PTCD3-209	ENST00000472044	ABCA1	O95477	2261 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	CPD	O75976	1380 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	TCRA	P04437	139 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	NBEAP1	P0C6P0	100 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	IL7	P13232	177 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	PSPH	P78330	225 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	KLKP1	Q107X0	134 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	ANP32B	Q92688	251 aa	Known RBP	0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	ATG5	Q9H1Y0	275 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	SPANXA1	Q9NS26	97 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	SPANXC	Q9NY87	97 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	GINS2	Q9Y248	185 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	HSPB11	Q9Y547	144 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	ANK2	Q01484	3957 aa		0.25	□□□□□ -2.37
PTCD3-209	ENST00000472044	WDR87	Q6ZQQ6	2873 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	ZFHX3	Q15911	3703 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044		A0A096LNT2	108 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044		A0A1B0GX51	115 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	FXYD1	O00168	92 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	DPM2	O94777	84 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	HIST1H1B	P16401	226 aa	Known RBP	0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	PCBD1	P61457	104 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	OR8I2	Q8N0Y5	310 aa		0.24	□□□□□ -2.37
PTCD3-209	ENST00000472044	TRANK1	O15050	2925 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	TRAV36DV7	A0A075B6V5	113 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	TRBV10-1	A0A0K0K1A3	114 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	HSD17B12	Q53GQ0	312 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	SPANXD	Q9BXN6	97 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	PAIP2B	Q9ULR5	123 aa	Known RBP	0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	ABCA4	P78363	2273 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	PIEZO2	Q9H5I5	2752 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	DSP	P15924	2871 aa	Known RBP	0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	CHD9	Q3L8U1	2897 aa		0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	PRRC2C	Q9Y520	2896 aa	Known RBP	0.23	□□□□□ -2.37
PTCD3-209	ENST00000472044	ZNF292	O60281	2723 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	ANKRD17	O75179	2603 aa	Known RBP	0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	NBPF19	A0A087WUL8	3843 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	AKAP9	Q99996	3911 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	ZNF142	P52746	1687 aa	Predicted RBP	0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	GNG14	A0A1W2PPG7	69 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	FAM92A	A1XBS5	289 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044		H0YJX3	145 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	HMGA1	P17096	107 aa	Known RBP	0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	SDC4	P31431	198 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	B2M	P61769	119 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	PLGLB1	Q02325	96 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	SPCS2	Q15005	226 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	OR8B8	Q15620	311 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	UNQ5815/PRO19632	Q6UWF5	114 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	SPINK6	Q6UWN8	80 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	TMEM14B	Q9NUH8	114 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	BSN	Q9UPA5	3926 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	MAP1A	P78559	2803 aa	Predicted RBP	0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	DNAH3	Q8TD57	4116 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	DMD	P11532	3685 aa		0.22	□□□□□ -2.37
PTCD3-209	ENST00000472044	FRY	Q5TBA9	3013 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	NSD1	Q96L73	2696 aa	Predicted RBP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	DNAH7	Q8WXX0	4024 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	NIPBL	Q6KC79	2804 aa	eCLIP	0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	KDM6B	O15054	1643 aa		0.21	□□□□□ -2.38
PTCD3-209	ENST00000472044	SCRIB	Q14160	1630 aa		0.21	□□□□□ -2.38

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