RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TRAV4A0A0B4J268 109 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 TYMSP04818 313 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 ATP6V0CP27449 155 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 NEGR1Q7Z3B1 354 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 C5orf17Q8NAS9 161 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 TREM1Q9NP99 234 aa11.12□□□□□ -0.63
COL9A3-208ENST00000469802 SERTM2A0A1B0GWG4 89 aa11.11□□□□□ -0.63
COL9A3-208ENST00000469802 M0R2P5 195 aa11.11□□□□□ -0.63
COL9A3-208ENST00000469802 GNRH2O43555 120 aa11.11□□□□□ -0.63
COL9A3-208ENST00000469802 RAB24Q969Q5 203 aa11.11□□□□□ -0.63
COL9A3-208ENST00000469802 ORM1P02763 201 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 TCRAP04437 139 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 GYPEP15421 78 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 GCHFRP30047 84 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 SRIP30626 198 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 SERF2P84101 59 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 Q5BKY6 102 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 ASB13Q8WXK3 278 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 SH3BGRL3Q9H299 93 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 SDF2L1Q9HCN8 221 aa11.1□□□□□ -0.63
COL9A3-208ENST00000469802 GGTLC3B5MD39 225 aa11.09□□□□□ -0.63
COL9A3-208ENST00000469802 IGLV2-11P01706 119 aa11.09□□□□□ -0.63
COL9A3-208ENST00000469802 MBP02144 154 aa11.09□□□□□ -0.63
COL9A3-208ENST00000469802 GIPP09681 153 aaPredicted RBP11.09□□□□□ -0.63
COL9A3-208ENST00000469802 KCNS1Q96KK3 526 aa11.09□□□□□ -0.63
COL9A3-208ENST00000469802 RNF222A6NCQ9 220 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 C9JCJ5 164 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 ZNF80P51504 273 aaPredicted RBP11.08□□□□□ -0.64
COL9A3-208ENST00000469802 WFDC10BQ8IUB3 73 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 OR4C5Q8NGB2 326 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 PCNPQ8WW12 178 aaKnown RBP11.08□□□□□ -0.64
COL9A3-208ENST00000469802 SGK494Q96LW2 274 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 NDFIP1Q9BT67 221 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 C11orf21Q9P2W6 132 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 TNFSF18Q9UNG2 199 aa11.08□□□□□ -0.64
COL9A3-208ENST00000469802 K7EP13 123 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 CXorf1O96002 111 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 DNAH10OSP0CZ25 163 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 GATA1P15976 413 aaPredicted RBP11.07□□□□□ -0.64
COL9A3-208ENST00000469802 MAPKAPK5-AS1Q8N8E1 139 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 TXNDC17Q9BRA2 123 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 TMEM167BQ9NRX6 74 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 LY96Q9Y6Y9 160 aa11.07□□□□□ -0.64
COL9A3-208ENST00000469802 LOC100131303A0A0U1RQF7 123 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 PFN1P07737 140 aaKnown RBP11.06□□□□□ -0.64
COL9A3-208ENST00000469802 CYB561D1Q8N8Q1 229 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 TMEM75Q8N9X5 138 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 C9orf85Q96MD7 179 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 PSG8Q9UQ74 426 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 TNFRSF18Q9Y5U5 241 aa11.06□□□□□ -0.64
COL9A3-208ENST00000469802 K7EQM0 130 aa11.05□□□□□ -0.64
COL9A3-208ENST00000469802 GCGP01275 180 aa11.05□□□□□ -0.64
COL9A3-208ENST00000469802 TIRAPP58753 221 aa11.05□□□□□ -0.64
COL9A3-208ENST00000469802 FLI1Q01543 452 aaPredicted RBP11.05□□□□□ -0.64
COL9A3-208ENST00000469802 RPL7L1Q6DKI1 246 aaKnown RBP11.05□□□□□ -0.64
COL9A3-208ENST00000469802 NFE4Q86UQ8 179 aa11.05□□□□□ -0.64
COL9A3-208ENST00000469802 ACTR3CQ9C0K3 210 aaPredicted RBP11.05□□□□□ -0.64
COL9A3-208ENST00000469802 EPDR1Q9UM22 224 aa11.05□□□□□ -0.64
COL9A3-208ENST00000469802 FBLL1A6NHQ2 334 aaKnown RBP11.04□□□□□ -0.64
COL9A3-208ENST00000469802 G3V3Q6 166 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 TAAR5O14804 337 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 ERVFC1-1P60608 527 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 SUMO1P63165 101 aaKnown RBP11.04□□□□□ -0.64
COL9A3-208ENST00000469802 ZNF726P1Q15940 193 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 DPPA3Q6W0C5 159 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 SH2D6Q7Z4S9 175 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 Q8N1X5 172 aa11.04□□□□□ -0.64
COL9A3-208ENST00000469802 INO80EQ8NBZ0 244 aaPredicted RBP11.04□□□□□ -0.64
COL9A3-208ENST00000469802 TRAV9-2A0A087WT02 112 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 A0A1W2PRE2 83 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 RS1O15537 224 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 ZNF876PQ49A33 203 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 SMUG1Q53HV7 270 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 CFAP126Q5VTH2 177 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 PTH2Q96A98 100 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 MSRB1Q9NZV6 116 aa11.03□□□□□ -0.64
COL9A3-208ENST00000469802 FXYD6-FXYD2A0A087WZ82 144 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 CIDEAO60543 219 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 RNASE3P12724 160 aaKnown RBP11.02□□□□□ -0.65
COL9A3-208ENST00000469802 EVI2AP22794 236 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 ZFP69Q49AA0 526 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 CDPF1Q6NVV7 123 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 PRNTQ86SH4 94 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 SLC25A29Q8N8R3 303 aa11.02□□□□□ -0.65
COL9A3-208ENST00000469802 A0A087WTM6 91 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 BORCS7-ASMTA0A0B4J1R7 106 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 CTXND1A0A1B0GTU2 59 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 TRBV6-4A0A1B0GX49 114 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 ZNF506Q5JVG8 444 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 SAPCD1Q5SSQ6 148 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 OR2T35Q8NGX2 323 aa11.01□□□□□ -0.65
COL9A3-208ENST00000469802 PGPEP1LA6NFU8 196 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 RHOHQ15669 191 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 C10orf126Q8N4M7 172 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 NHLRC2Q8NBF2 726 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 LINC00479Q96M42 142 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 PGPEP1Q9NXJ5 209 aa11□□□□□ -0.65
COL9A3-208ENST00000469802 IGKV3D-20A0A0C4DH25 116 aa10.99□□□□□ -0.65
COL9A3-208ENST00000469802 EREGO14944 169 aa10.99□□□□□ -0.65
COL9A3-208ENST00000469802 CRYGDP07320 174 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms