RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 IGLV11-55A0A075B6I3 123 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 CEND1Q8N111 149 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 ZNF502Q8TBZ5 544 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 ZNF418Q8TF45 676 aaPredicted RBP9.57□□□□□ -0.88
HDAC4-208ENST00000463007 AGPAT4-IT1Q9H0P7 198 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 NDUFS8O00217 210 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 IGLC6P0CF74 106 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 PAX8Q06710 450 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 AJUBAQ96IF1 538 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 PDE6HQ13956 83 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 ZNF575Q86XF7 245 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 A0A1B0GWB2 263 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 APOMO95445 188 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 S100A4P26447 101 aaKnown RBP9.56□□□□□ -0.88
HDAC4-208ENST00000463007 EBI3Q14213 229 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 TMEM78Q5T7P6 136 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 SCGB1D4Q6XE38 83 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 CELSR2Q9HCU4 2923 aa9.56□□□□□ -0.88
HDAC4-208ENST00000463007 NXT2Q9NPJ8 142 aaKnown RBP9.56□□□□□ -0.88
HDAC4-208ENST00000463007 CEACAM3P40198 252 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 IGLL5B9A064 214 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 ZFP36P26651 326 aaKnown RBP9.55□□□□□ -0.88
HDAC4-208ENST00000463007 TMEM219Q86XT9 240 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 C14orf178Q8N769 122 aaPredicted RBP9.55□□□□□ -0.88
HDAC4-208ENST00000463007 PRORYQ9H606 182 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 SRD5A1P18405 259 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 C12orf74Q32Q52 190 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 TMEM95Q3KNT9 176 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 TTC9CQ8N5M4 171 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 KLHL30-AS1Q8NEE0 82 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 RPL39LQ96EH5 51 aaKnown RBP9.55□□□□□ -0.88
HDAC4-208ENST00000463007 ZNF48Q96MX3 618 aaPredicted RBP9.55□□□□□ -0.88
HDAC4-208ENST00000463007 SIGMAR1Q99720 223 aa9.55□□□□□ -0.88
HDAC4-208ENST00000463007 SIVA1O15304 175 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 SRSF9Q13242 221 aaKnown RBP eCLIP9.54□□□□□ -0.887e-6■■■■□ 20
HDAC4-208ENST00000463007 LAGE3Q14657 143 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 TIMD4Q96H15 378 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 SIRPDQ9H106 197 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 TLN2Q9Y4G6 2542 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 TRBV6-1A0A0K0K1D8 114 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 GAGE12HA6NDE8 117 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 A6NJY4 79 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 ARL3P36405 182 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 CD300EQ496F6 205 aaPredicted RBP9.54□□□□□ -0.88
HDAC4-208ENST00000463007 VMO1Q7Z5L0 202 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 DPF1Q92782 380 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 SCGB3A1Q96QR1 104 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 POLQO75417 2590 aa9.54□□□□□ -0.88
HDAC4-208ENST00000463007 PTH2Q96A98 100 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 KLK9Q2XQG4 91 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 C16orf92Q96LL3 132 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 SPAG8Q99932 426 aaPredicted RBP9.53□□□□□ -0.88
HDAC4-208ENST00000463007 MRPL16Q9NX20 251 aaKnown RBP9.53□□□□□ -0.88
HDAC4-208ENST00000463007 KLK9Q9UKQ9 250 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 MYO9AB2RTY4 2548 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 PTPN13Q12923 2485 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 OR11H12B2RN74 326 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 F6UB75 175 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 ATP6V0E1O15342 81 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 GATD1Q8NB37 220 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 OR11H1Q8NG94 326 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 OR11H2Q8NH07 326 aa9.53□□□□□ -0.88
HDAC4-208ENST00000463007 H7C2G1 150 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 HLA-DRB4P13762 266 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 GAGE13Q4V321 117 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 Q8N8P6 123 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 PGPEP1Q9NXJ5 209 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 HLA-DRB4X5D2U9 266 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 WNK1Q9H4A3 2382 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 IGHV7-81A0A0B4J1V7 117 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 PSMB2P49721 201 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 FOXI2Q6ZQN5 318 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 C20orf78Q9BR46 151 aa9.52□□□□□ -0.89
HDAC4-208ENST00000463007 OOSP1A8MZH6 123 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 TMEM190Q8WZ59 177 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 BUB3O43684 328 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 PHLDA1Q8WV24 401 aaPredicted RBP9.51□□□□□ -0.89
HDAC4-208ENST00000463007 ITLN2Q8WWU7 325 aaPredicted RBP9.51□□□□□ -0.89
HDAC4-208ENST00000463007 ATP5LO75964 103 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 IGHV3-11P01762 117 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 PRR9Q5T870 116 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 MINOS1Q5TGZ0 78 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 MINOS1-NBL1R4GNA1 71 aa9.51□□□□□ -0.89
HDAC4-208ENST00000463007 SPANXB1Q9NS25 103 aaPredicted RBP9.5□□□□□ -0.89
HDAC4-208ENST00000463007 ZNF815PA8K554 130 aa9.5□□□□□ -0.89
HDAC4-208ENST00000463007 SRSF1Q07955 248 aaKnown RBP eCLIP9.5□□□□□ -0.89
HDAC4-208ENST00000463007 C8orf86Q6ZUL3 223 aa9.5□□□□□ -0.89
HDAC4-208ENST00000463007 UBTD1Q9HAC8 227 aa9.5□□□□□ -0.89
HDAC4-208ENST00000463007 IGHV3-64A0A075B6Q5 118 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 LINC01549A6NIU2 74 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 LY6DQ14210 128 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 ZFP2Q6ZN57 461 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 PHLDA3Q9Y5J5 127 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 USP9XQ93008 2570 aaPredicted RBP9.49□□□□□ -0.89
HDAC4-208ENST00000463007 F5H697 171 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 J3QR89 54 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 SCGB2A1O75556 95 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 SLC25A16P16260 332 aa9.49□□□□□ -0.89
HDAC4-208ENST00000463007 RNASE4P34096 147 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms