RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 IGHV4-4A0A075B6R2 117 aa16.19■□□□□ 0.18
CCDC28B-203ENST00000461819 TRBV6-1A0A0K0K1D8 114 aa16.19■□□□□ 0.18
CCDC28B-203ENST00000461819 Q6ZTI0 123 aa16.19■□□□□ 0.18
CCDC28B-203ENST00000461819 ALMS1Q8TCU4 4167 aa16.19■□□□□ 0.18
CCDC28B-203ENST00000461819 TRGV1A0A0A0MS02 117 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 LTAP01374 205 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 ATP5G1P05496 136 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 BCL2P10415 239 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 TCTAP57738 103 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 MEF2BQ02080 365 aaPredicted RBP16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 MDFICQ9P1T7 246 aa16.18■□□□□ 0.18
CCDC28B-203ENST00000461819 LCE6AA0A183 80 aa16.17■□□□□ 0.18
CCDC28B-203ENST00000461819 TYMSP04818 313 aa16.17■□□□□ 0.18
CCDC28B-203ENST00000461819 LINC00612Q8N6U2 182 aa16.17■□□□□ 0.18
CCDC28B-203ENST00000461819 ZC2HC1AQ96GY0 325 aa16.17■□□□□ 0.18
CCDC28B-203ENST00000461819 FABP5P3A8MUU1 101 aa16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 GNRH2O43555 120 aa16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 TAGLN2P37802 199 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 MRPL16Q9NX20 251 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 C11orf21Q9P2W6 132 aa16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 VAX2Q9UIW0 290 aa16.16■□□□□ 0.18
CCDC28B-203ENST00000461819 TRGV2A0A075B6R0 118 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 F5H768 121 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 PDE6DO43924 150 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 SPINK4O60575 86 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 NHLRC2Q8NBF2 726 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 C11orf52Q96A22 123 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 NDUFAF3Q9BU61 184 aa16.15■□□□□ 0.18
CCDC28B-203ENST00000461819 IGHV3-16A0A0C4DH30 117 aa16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 RPL35P42766 123 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 FAM162BQ5T6X4 162 aa16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 FAM210BQ96KR6 192 aa16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 SPXQ9BT56 116 aa16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 APLNQ9ULZ1 77 aa16.14■□□□□ 0.17
CCDC28B-203ENST00000461819 LGALS9BQ3B8N2 356 aa16.13■□□□□ 0.17
CCDC28B-203ENST00000461819 COX8CQ7Z4L0 72 aa16.13■□□□□ 0.17
CCDC28B-203ENST00000461819 BAGE2Q86Y30 109 aa16.13■□□□□ 0.17
CCDC28B-203ENST00000461819 DERL1Q9BUN8 251 aa16.13■□□□□ 0.17
CCDC28B-203ENST00000461819 SH2D1AO60880 128 aa16.12■□□□□ 0.17
CCDC28B-203ENST00000461819 TMEM88Q6PEY1 159 aa16.12■□□□□ 0.17
CCDC28B-203ENST00000461819 LINC00476Q8WZB0 136 aa16.12■□□□□ 0.17
CCDC28B-203ENST00000461819 DNAH1Q9P2D7 4330 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 SACSQ9NZJ4 4579 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 LY6G6CO95867 125 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 ORM1P02763 201 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 TEX261Q6UWH6 196 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 LYPD6BQ8NI32 183 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 MED9Q9NWA0 146 aa16.11■□□□□ 0.17
CCDC28B-203ENST00000461819 B4DEV8 164 aa16.1■□□□□ 0.17
CCDC28B-203ENST00000461819 CRIP1P50238 77 aa16.1■□□□□ 0.17
CCDC28B-203ENST00000461819 IGKV3D-20A0A0C4DH25 116 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 RBFOX3A6NFN3 312 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 M0R036 132 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 OR5I1Q13606 314 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 ZNF674Q2M3X9 581 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 CENPWQ5EE01 88 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 C18orf15Q96N68 181 aa16.09■□□□□ 0.17
CCDC28B-203ENST00000461819 M0R2P5 195 aa16.08■□□□□ 0.16
CCDC28B-203ENST00000461819 S100A4P26447 101 aaKnown RBP16.08■□□□□ 0.16
CCDC28B-203ENST00000461819 ASIPP42127 132 aa16.07■□□□□ 0.16
CCDC28B-203ENST00000461819 GNG4P50150 75 aa16.07■□□□□ 0.16
CCDC28B-203ENST00000461819 PRR27Q6MZM9 219 aa16.07■□□□□ 0.16
CCDC28B-203ENST00000461819 MLST8Q9BVC4 326 aa16.07■□□□□ 0.16
CCDC28B-203ENST00000461819 MUC4Q99102 2169 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 IGHV3-53P01767 116 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 HOXA5P20719 270 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 TOR2AQ5JU69 321 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 LGALS9CQ6DKI2 356 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 C15orf53Q8NAA6 179 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 RASL10AQ92737 203 aa16.06■□□□□ 0.16
CCDC28B-203ENST00000461819 RYR2Q92736 4967 aa16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 RAB19A4D1S5 217 aa16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 KRBOX1C9JBD0 128 aa16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 MGST1P10620 155 aaKnown RBP16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 ZNF506Q5JVG8 444 aa16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 PCNPQ8WW12 178 aaKnown RBP16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 EIF5A2Q9GZV4 153 aaKnown RBP16.05■□□□□ 0.16
CCDC28B-203ENST00000461819 TRAV26-1A0A087WT03 109 aa16.04■□□□□ 0.16
CCDC28B-203ENST00000461819 TMSB15BA0A087X1C1 80 aa16.04■□□□□ 0.16
CCDC28B-203ENST00000461819 C9JCJ5 164 aa16.04■□□□□ 0.16
CCDC28B-203ENST00000461819 LINC01559Q495D7 138 aa16.04■□□□□ 0.16
CCDC28B-203ENST00000461819 C9orf85Q96MD7 179 aa16.04■□□□□ 0.16
CCDC28B-203ENST00000461819 A0A0J9YY99 117 aa16.03■□□□□ 0.16
CCDC28B-203ENST00000461819 NUDT3O95989 172 aa16.03■□□□□ 0.16
CCDC28B-203ENST00000461819 RNASE3P12724 160 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-203ENST00000461819 ZNF876PQ49A33 203 aa16.03■□□□□ 0.16
CCDC28B-203ENST00000461819 RYR3Q15413 4870 aa16.03■□□□□ 0.16
CCDC28B-203ENST00000461819 HYDINQ4G0P3 5121 aa16.02■□□□□ 0.16
CCDC28B-203ENST00000461819 GRIFINA4D1Z8 144 aa16.02■□□□□ 0.16
CCDC28B-203ENST00000461819 H3BVH4 76 aa16.02■□□□□ 0.16
CCDC28B-203ENST00000461819 SMIM12Q96EX1 92 aa16.02■□□□□ 0.16
CCDC28B-203ENST00000461819 FAM210AQ96ND0 272 aa16.02■□□□□ 0.16
CCDC28B-203ENST00000461819 TMEM250H0YL14 139 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 P0DMU3 169 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 FAM231AP0DMU4 169 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 FAM231CP0DMU5 169 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 CEBPGP53567 150 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 OR4C5Q8NGB2 326 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 IL36BQ9NZH7 164 aa16.01■□□□□ 0.15
CCDC28B-203ENST00000461819 TRBV20OR9-2A0A075B6H5 130 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms