RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 INO80EQ8NBZ0 244 aaPredicted RBP9.59□□□□□ -0.87
USP4-206ENST00000461553 RASL10AQ92737 203 aa9.59□□□□□ -0.87
USP4-206ENST00000461553 RAB24Q969Q5 203 aa9.59□□□□□ -0.87
USP4-206ENST00000461553 KCNS1Q96KK3 526 aa9.59□□□□□ -0.87
USP4-206ENST00000461553 TMEM167BQ9NRX6 74 aa9.59□□□□□ -0.87
USP4-206ENST00000461553 TRAV4A0A0B4J268 109 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 IGHV3-16A0A0C4DH30 117 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 M0R2P5 195 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 TYMSP04818 313 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 LINC00315P59091 139 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 ZFP69Q49AA0 526 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 IQCF2Q8IXL9 164 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 ZNF479Q96JC4 524 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 SH3BGRL3Q9H299 93 aa9.58□□□□□ -0.88
USP4-206ENST00000461553 FXYD6-FXYD2A0A087WZ82 144 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 BORCS7-ASMTA0A0B4J1R7 106 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 C9JCJ5 164 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 CXorf1O96002 111 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 ORM1P02763 201 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 TCRAP04437 139 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 SPATA12Q7Z6I5 190 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 OR4C5Q8NGB2 326 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 TVP23CQ96ET8 276 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 SGK494Q96LW2 274 aa9.57□□□□□ -0.88
USP4-206ENST00000461553 ACTR3CQ9C0K3 210 aaPredicted RBP9.57□□□□□ -0.88
USP4-206ENST00000461553 K7EQD1 137 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 GYPEP15421 78 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 CYB561D1Q8N8Q1 229 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 SUN5Q8TC36 379 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 TXNDC17Q9BRA2 123 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 TNFSF18Q9UNG2 199 aa9.56□□□□□ -0.88
USP4-206ENST00000461553 RNF222A6NCQ9 220 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 GGTLC3B5MD39 225 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 GNRH2O43555 120 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 Q5BKY6 102 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 LYPD5Q6UWN5 251 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 TMEM75Q8N9X5 138 aa9.55□□□□□ -0.88
USP4-206ENST00000461553 FBLL1A6NHQ2 334 aaKnown RBP9.54□□□□□ -0.88
USP4-206ENST00000461553 CDK2AP2O75956 126 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 GCGP01275 180 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 PFN1P07737 140 aaKnown RBP9.54□□□□□ -0.88
USP4-206ENST00000461553 FLI1Q01543 452 aaPredicted RBP9.54□□□□□ -0.88
USP4-206ENST00000461553 SMUG1Q53HV7 270 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 RPL7L1Q6DKI1 246 aaKnown RBP9.54□□□□□ -0.88
USP4-206ENST00000461553 OR2T35Q8NGX2 323 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 PSG8Q9UQ74 426 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 LY96Q9Y6Y9 160 aa9.54□□□□□ -0.88
USP4-206ENST00000461553 TRAV9-2A0A087WT02 112 aa9.53□□□□□ -0.88
USP4-206ENST00000461553 CTXND1A0A1B0GTU2 59 aa9.53□□□□□ -0.88
USP4-206ENST00000461553 TAAR5O14804 337 aa9.53□□□□□ -0.88
USP4-206ENST00000461553 SUMO1P63165 101 aaKnown RBP9.53□□□□□ -0.88
USP4-206ENST00000461553 PRNTQ86SH4 94 aa9.53□□□□□ -0.88
USP4-206ENST00000461553 EPDR1Q9UM22 224 aa9.53□□□□□ -0.88
USP4-206ENST00000461553 A0A1W2PRE2 83 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 ZNF80P51504 273 aaPredicted RBP9.52□□□□□ -0.89
USP4-206ENST00000461553 ERVFC1-1P60608 527 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 RGS21Q2M5E4 152 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 AKR1C8PQ5T2L2 129 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 Q6ZRN7 208 aaPredicted RBP9.52□□□□□ -0.89
USP4-206ENST00000461553 SH2D6Q7Z4S9 175 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 NFE4Q86UQ8 179 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 WFDC10BQ8IUB3 73 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 NHLRC2Q8NBF2 726 aa9.52□□□□□ -0.89
USP4-206ENST00000461553 K7EP13 123 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 EREGO14944 169 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 IGLV2-11P01706 119 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 EVI2AP22794 236 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 PPT1P50897 306 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 ZNF876PQ49A33 203 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 SAPCD1Q5SSQ6 148 aa9.51□□□□□ -0.89
USP4-206ENST00000461553 LOC100131303A0A0U1RQF7 123 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 IFNA7P01567 189 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 GATA1P15976 413 aaPredicted RBP9.5□□□□□ -0.89
USP4-206ENST00000461553 KRTAP10-2P60368 255 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 UBE2G2P60604 165 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 RHOHQ15669 191 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 ZNF726P1Q15940 193 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 C9orf85Q96MD7 179 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 PRADC1Q9BSG0 188 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 C11orf21Q9P2W6 132 aa9.5□□□□□ -0.89
USP4-206ENST00000461553 PEX7O00628 323 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 ARPC5O15511 151 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 CIDEAO60543 219 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 FGF8P55075 233 aaPredicted RBP9.49□□□□□ -0.89
USP4-206ENST00000461553 Q86TA4 180 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 C10orf126Q8N4M7 172 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 MAPKAPK5-AS1Q8N8E1 139 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 MSRB1Q9NZV6 116 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 ARL2-SNX15V9GYD0 113 aa9.49□□□□□ -0.89
USP4-206ENST00000461553 TRAV34A0A0B4J273 112 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 MAP1LC3B2A6NCE7 125 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 RS1O15537 224 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 DNAH10OSP0CZ25 163 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 S100A4P26447 101 aaKnown RBP9.48□□□□□ -0.89
USP4-206ENST00000461553 ZNF506Q5JVG8 444 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 CFAP126Q5VTH2 177 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 HIST1H2BAQ96A08 127 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 NKX6-2Q9C056 277 aaPredicted RBP9.48□□□□□ -0.89
USP4-206ENST00000461553 MAP1LC3BQ9GZQ8 125 aa9.48□□□□□ -0.89
USP4-206ENST00000461553 IGHV3-73A0A0B4J1V6 119 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms