RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TRGV2A0A075B6R0 118 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 CDK2AP2O75956 126 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 PYYP10082 97 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 GAGE1Q13065 139 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 GAGE4Q13068 117 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 ERCC8Q13216 396 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 ASAH1Q13510 395 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 ESRGQ1W209 222 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 IBA57Q5T440 356 aaKnown RBP4.99□□□□□ -1.61
USP54-208ENST00000461520 TMEM78Q5T7P6 136 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 Q6ZTI0 123 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 EXOC3-AS1Q8N2X6 119 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 OR5C1Q8NGR4 320 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 BLNKQ8WV28 456 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 S100ZQ8WXG8 99 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 SLC25A2Q9BXI2 301 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 SLC25A31Q9H0C2 315 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 GSN-AS1Q9NRJ2 163 aa4.99□□□□□ -1.61
USP54-208ENST00000461520 MRPS16Q9Y3D3 137 aaKnown RBP4.99□□□□□ -1.61
USP54-208ENST00000461520 A0A096LPF7 62 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 TRGV1A0A0A0MS02 117 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 TRBV7-9A0A0J9YWB2 115 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 E5RGE8 158 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 SPINK4O60575 86 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 GPX1P07203 203 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 NBEAP1P0C6P0 100 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 TCL1AP56279 114 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 CYCSP99999 105 aaKnown RBP4.98□□□□□ -1.61
USP54-208ENST00000461520 CD300CQ08708 224 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 BTN1A1Q13410 526 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 GCSAMLQ5JQS6 135 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 PAPPA-AS1Q5QFB9 102 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 THAP6Q8TBB0 222 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 ENKURQ8TC29 256 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 VSIG2Q96IQ7 327 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 FAM167A-AS1Q96KT0 104 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 MRPL32Q9BYC8 188 aaKnown RBP4.98□□□□□ -1.61
USP54-208ENST00000461520 NMES1Q9C002 83 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 OR51M1Q9H341 326 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 KCNIP2Q9NS61 270 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 ZNF492Q9P255 531 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 FUT9Q9Y231 359 aa4.98□□□□□ -1.61
USP54-208ENST00000461520 IGHV1OR15-1A0A075B7D0 117 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 IGKV2-40A0A087WW87 121 aaPredicted RBP4.97□□□□□ -1.61
USP54-208ENST00000461520 C17orf112F2Z3M2 114 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 PRAF2O60831 178 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 IGKV2D-40P01614 121 aaPredicted RBP4.97□□□□□ -1.61
USP54-208ENST00000461520 RNASE4P34096 147 aaKnown RBP4.97□□□□□ -1.61
USP54-208ENST00000461520 SLAQ13239 276 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 FAM122CQ6P4D5 195 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 MIR17HGQ75NE6 70 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 LYPD1Q8N2G4 141 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 ZFAND2AQ8N6M9 145 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 FXYD5Q96DB9 178 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 ST6GAL2Q96JF0 529 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 ARPC5LQ9BPX5 153 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 PAXXQ9BUH6 204 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 WDR61Q9GZS3 305 aaKnown RBP4.97□□□□□ -1.61
USP54-208ENST00000461520 OR5AC2Q9NZP5 309 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 KLF12Q9Y4X4 402 aa4.97□□□□□ -1.61
USP54-208ENST00000461520 RBAKDNA6NC62 111 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 SIX6O95475 246 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 OR10J4P0C629 311 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 CSN1S1P47710 185 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 ZNF138P52744 262 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 KRTAP10-5P60370 271 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 LRRC37A5PQ49AS3 106 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 PRR9Q5T870 116 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 SPATA12Q7Z6I5 190 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 VGLL1Q99990 258 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 PRO0255Q9UI72 69 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 TP53TG3Q9ULZ0 132 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 LENEPQ9Y5L5 61 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 ICOSQ9Y6W8 199 aa4.96□□□□□ -1.62
USP54-208ENST00000461520 INMT-MINDY4F8WBC2 141 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 SIVA1O15304 175 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 OR7C2O60412 319 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 UPK1BO75841 260 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 PET100P0DJ07 73 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 RANP62826 216 aaKnown RBP4.95□□□□□ -1.62
USP54-208ENST00000461520 IFITM3Q01628 133 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 ZNF415Q09FC8 603 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 PPP1R1CQ8WVI7 109 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 PHYHIPLQ96FC7 376 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 ATP5SQ99766 215 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 MRPL16Q9NX20 251 aaKnown RBP4.95□□□□□ -1.62
USP54-208ENST00000461520 HHLA3Q9XRX5 114 aa4.95□□□□□ -1.62
USP54-208ENST00000461520 IGHV3-53P01767 116 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 CRYBA4P53673 196 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 H2BFSP57053 126 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 LINC00315P59091 139 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 TAS2R45P59539 299 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 UBE2L3P68036 154 aaKnown RBP4.94□□□□□ -1.62
USP54-208ENST00000461520 ZNF266Q14584 549 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 MRPL23Q16540 153 aaKnown RBP4.94□□□□□ -1.62
USP54-208ENST00000461520 KHDC3LQ587J8 217 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 Q6AWC8 147 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 FAM159AQ6UWV7 190 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 Q6ZQT7 251 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 Q6ZRN7 208 aaPredicted RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms