RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 IGKCP01834 107 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 ZC2HC1BQ5TFG8 222 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 LINC00477Q96M19 166 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 SMR3AQ99954 134 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 LOC107984156A0A0G2JMH3 177 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 ESDP10768 282 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 GATA1P15976 413 aaPredicted RBP9.05□□□□□ -0.96
NPHP4-204ENST00000460696 BLCAPP62952 87 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 LAGE3Q14657 143 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 ARL17AQ8IVW1 177 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 OR2K2Q8NGT1 345 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 MBD6Q96DN6 1003 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 USMG5Q96IX5 58 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 PRSS22Q9GZN4 317 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 UNC79Q9P2D8 2635 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 WI2-2373I1.2A0A1W2PRP0 233 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 PAX1P15863 534 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 FOXE3Q13461 319 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 LDLRAD2Q5SZI1 272 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 DTX2Q86UW9 622 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 JMJD8Q96S16 334 aa9.05□□□□□ -0.96
NPHP4-204ENST00000460696 NHP2Q9NX24 153 aaKnown RBP9.05□□□□□ -0.96
NPHP4-204ENST00000460696 BUB3O43684 328 aa9.04□□□□□ -0.96
NPHP4-204ENST00000460696 SMIM13P0DJ93 91 aa9.04□□□□□ -0.96
NPHP4-204ENST00000460696 IGHV4-38-2P0DP08 117 aa9.04□□□□□ -0.96
NPHP4-204ENST00000460696 DSCAML1Q8TD84 2053 aa9.04□□□□□ -0.96
NPHP4-204ENST00000460696 ORAOV1Q8WV07 137 aa9.04□□□□□ -0.96
NPHP4-204ENST00000460696 DAZ1Q9NQZ3 744 aaKnown RBP9.04□□□□□ -0.96
NPHP4-204ENST00000460696 H7C2G1 150 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 TNFRSF13BO14836 293 aaPredicted RBP9.03□□□□□ -0.96
NPHP4-204ENST00000460696 ZNF747Q9BV97 191 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 RNF114Q9Y508 228 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 SYNJ2BPP57105 145 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 DEFB1P60022 68 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 TMEM95Q3KNT9 176 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 SFTA2Q6UW10 78 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 C3orf56Q8N813 242 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 SIRPDQ9H106 197 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 A0A087WWL8 130 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 PSMB2P49721 201 aa9.03□□□□□ -0.96
NPHP4-204ENST00000460696 RAI1Q7Z5J4 1906 aaPredicted RBP9.02□□□□□ -0.96
NPHP4-204ENST00000460696 LY6LH3BQJ8 138 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 PIP4P2Q8N4L2 257 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 A0A1B0GXF2 115 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 PPP1R17O96001 155 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 PRSS2P07478 247 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 SLC25A16P16260 332 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 ORMDL2Q53FV1 153 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 PTPRBP23467 1997 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 ARL6IP6Q8N6S5 226 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 DPH3P1Q9H4G8 78 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 COX11Q9Y6N1 276 aa9.02□□□□□ -0.97
NPHP4-204ENST00000460696 ODF3BA8MYP8 253 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 MYCNOSP40205 109 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 EMP1P54849 157 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 MRPL52Q86TS9 123 aaKnown RBP9.01□□□□□ -0.97
NPHP4-204ENST00000460696 DUX3Q96PT4 197 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 SPCS1Q9Y6A9 102 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 DSCR9P59020 149 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 LINC00310P59036 64 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 CD300EQ496F6 205 aaPredicted RBP9.01□□□□□ -0.97
NPHP4-204ENST00000460696 RAX2Q96IS3 184 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 SPOCK3Q9BQ16 436 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 NDUFS8O00217 210 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 LMO4P61968 165 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 ANXA2RQ3ZCQ2 193 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 LINC01356Q8N9X3 169 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 LOC400499M0QZD8 3231 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 TACC2O95359 2948 aa9.01□□□□□ -0.97
NPHP4-204ENST00000460696 VWC2LB2RUY7 222 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 PCP4P48539 62 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 NSUN5P1Q3KNT7 163 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 DKK2Q9UBU2 259 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 CYSLTR1Q9Y271 337 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 CHTOPQ9Y3Y2 248 aaKnown RBP9□□□□□ -0.97
NPHP4-204ENST00000460696 ZNF80P51504 273 aaPredicted RBP9□□□□□ -0.97
NPHP4-204ENST00000460696 HSD52Q0P140 79 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 UBE2V1Q13404 147 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 IGHV3-73A0A0B4J1V6 119 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 INAFM1C9JVW0 142 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 NDUFA4O00483 81 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 APOMO95445 188 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 SEC11AP67812 179 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 C5orf56Q8N8D9 126 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 CSTL1Q9H114 145 aa9□□□□□ -0.97
NPHP4-204ENST00000460696 C2orf70A6NJV1 201 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 PF4P02776 101 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 OR9G4Q8NGQ1 327 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 LGALS3P17931 250 aaKnown RBP8.99□□□□□ -0.97
NPHP4-204ENST00000460696 NEGR1Q7Z3B1 354 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 TP73-AS1Q9UF72 201 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 TRAV12-2A0A075B6T6 113 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 IGHV4-59P01825 116 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 LINC01587Q99440 93 aa8.99□□□□□ -0.97
NPHP4-204ENST00000460696 TMEM238LA0A1B0GVL6 79 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 A6NJY4 79 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 NPIPB6E9PJ23 425 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 CRIP1P50238 77 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 LOXL1Q08397 574 aaPredicted RBP8.98□□□□□ -0.97
NPHP4-204ENST00000460696 SPINK13Q1W4C9 94 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms