RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 KCNS1Q96KK3 526 aa15.52■□□□□ 0.08
PTPN4-207ENST00000460162 TXNDC17Q9BRA2 123 aa15.52■□□□□ 0.08
PTPN4-207ENST00000460162 SDF2L1Q9HCN8 221 aa15.52■□□□□ 0.08
PTPN4-207ENST00000460162 ALG5Q9Y673 324 aa15.52■□□□□ 0.08
PTPN4-207ENST00000460162 LY96Q9Y6Y9 160 aa15.52■□□□□ 0.08
PTPN4-207ENST00000460162 TRAV9-2A0A087WT02 112 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 HMGB3O15347 200 aaKnown RBP15.51■□□□□ 0.07
PTPN4-207ENST00000460162 TYMSP04818 313 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 STAG3L2P0CL84 134 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 STAG3L3P0CL85 134 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 ERVFC1-1P60608 527 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 TVP23CQ96ET8 276 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 NDFIP1Q9BT67 221 aa15.51■□□□□ 0.07
PTPN4-207ENST00000460162 PSMG3Q9BT73 122 aaPredicted RBP15.51■□□□□ 0.07
PTPN4-207ENST00000460162 Q8N1X5 172 aa15.5■□□□□ 0.07
PTPN4-207ENST00000460162 C5orf17Q8NAS9 161 aa15.5■□□□□ 0.07
PTPN4-207ENST00000460162 HSD17B11Q8NBQ5 300 aa15.5■□□□□ 0.07
PTPN4-207ENST00000460162 OR4C5Q8NGB2 326 aa15.5■□□□□ 0.07
PTPN4-207ENST00000460162 AQP10Q96PS8 301 aa15.5■□□□□ 0.07
PTPN4-207ENST00000460162 EREGO14944 169 aa15.49■□□□□ 0.07
PTPN4-207ENST00000460162 GNRH2O43555 120 aa15.49■□□□□ 0.07
PTPN4-207ENST00000460162 WFDC10BQ8IUB3 73 aa15.49■□□□□ 0.07
PTPN4-207ENST00000460162 CDPF1Q6NVV7 123 aa15.48■□□□□ 0.07
PTPN4-207ENST00000460162 SUN5Q8TC36 379 aa15.48■□□□□ 0.07
PTPN4-207ENST00000460162 ASB13Q8WXK3 278 aa15.48■□□□□ 0.07
PTPN4-207ENST00000460162 K7EQM0 130 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 PTTG1O95997 202 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 TCRAP04437 139 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 DNAH10OSP0CZ25 163 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 EVI2AP22794 236 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 SH2D6Q7Z4S9 175 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 BATF3Q9NR55 127 aa15.47■□□□□ 0.07
PTPN4-207ENST00000460162 MBP02144 154 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 GCHFRP30047 84 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 SERF2P84101 59 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 RAB24Q969Q5 203 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 PGPEP1Q9NXJ5 209 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 MSRB1Q9NZV6 116 aa15.46■□□□□ 0.07
PTPN4-207ENST00000460162 ATP6V0CP27449 155 aa15.45■□□□□ 0.06
PTPN4-207ENST00000460162 MED28Q9H204 178 aa15.45■□□□□ 0.06
PTPN4-207ENST00000460162 TNFRSF18Q9Y5U5 241 aa15.45■□□□□ 0.06
PTPN4-207ENST00000460162 GATA1P15976 413 aaPredicted RBP15.44■□□□□ 0.06
PTPN4-207ENST00000460162 TIRAPP58753 221 aa15.44■□□□□ 0.06
PTPN4-207ENST00000460162 C10orf126Q8N4M7 172 aa15.44■□□□□ 0.06
PTPN4-207ENST00000460162 SGK494Q96LW2 274 aa15.44■□□□□ 0.06
PTPN4-207ENST00000460162 TMEM167BQ9NRX6 74 aa15.44■□□□□ 0.06
PTPN4-207ENST00000460162 LOC100131303A0A0U1RQF7 123 aa15.43■□□□□ 0.06
PTPN4-207ENST00000460162 FBLL1A6NHQ2 334 aaKnown RBP15.43■□□□□ 0.06
PTPN4-207ENST00000460162 GGTLC3B5MD39 225 aa15.43■□□□□ 0.06
PTPN4-207ENST00000460162 ZFP69Q49AA0 526 aa15.43■□□□□ 0.06
PTPN4-207ENST00000460162 SCRT2Q9NQ03 307 aa15.43■□□□□ 0.06
PTPN4-207ENST00000460162 A0A087WTM6 91 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 TAAR5O14804 337 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 CIDEAO60543 219 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 CXorf1O96002 111 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 GCGP01275 180 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 PFN1P07737 140 aaKnown RBP15.42■□□□□ 0.06
PTPN4-207ENST00000460162 ZNF80P51504 273 aaPredicted RBP15.42■□□□□ 0.06
PTPN4-207ENST00000460162 CYB561D1Q8N8Q1 229 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 TMEM75Q8N9X5 138 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 NHLRC2Q8NBF2 726 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 TNFSF18Q9UNG2 199 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 PSG8Q9UQ74 426 aa15.42■□□□□ 0.06
PTPN4-207ENST00000460162 IGLV2-11P01706 119 aa15.41■□□□□ 0.06
PTPN4-207ENST00000460162 PPT1P50897 306 aa15.41■□□□□ 0.06
PTPN4-207ENST00000460162 FLI1Q01543 452 aaPredicted RBP15.41■□□□□ 0.06
PTPN4-207ENST00000460162 ZNF876PQ49A33 203 aa15.41■□□□□ 0.06
PTPN4-207ENST00000460162 ACTR3CQ9C0K3 210 aaPredicted RBP15.41■□□□□ 0.06
PTPN4-207ENST00000460162 SH3BGRL3Q9H299 93 aa15.41■□□□□ 0.06
PTPN4-207ENST00000460162 C11orf21Q9P2W6 132 aa15.41■□□□□ 0.06
PTPN4-207ENST00000460162 CRYGDP07320 174 aa15.4■□□□□ 0.06
PTPN4-207ENST00000460162 GIPP09681 153 aaPredicted RBP15.4■□□□□ 0.06
PTPN4-207ENST00000460162 SUMO1P63165 101 aaKnown RBP15.4■□□□□ 0.06
PTPN4-207ENST00000460162 SMUG1Q53HV7 270 aa15.4■□□□□ 0.06
PTPN4-207ENST00000460162 C9orf85Q96MD7 179 aa15.4■□□□□ 0.06
PTPN4-207ENST00000460162 EPDR1Q9UM22 224 aa15.4■□□□□ 0.06
PTPN4-207ENST00000460162 RS1O15537 224 aa15.39■□□□□ 0.05
PTPN4-207ENST00000460162 RHOHQ15669 191 aa15.39■□□□□ 0.05
PTPN4-207ENST00000460162 CFAP126Q5VTH2 177 aa15.39■□□□□ 0.05
PTPN4-207ENST00000460162 PTH2Q96A98 100 aa15.39■□□□□ 0.05
PTPN4-207ENST00000460162 BOLA1Q9Y3E2 137 aa15.39■□□□□ 0.05
PTPN4-207ENST00000460162 TRBV6-4A0A1B0GX49 114 aa15.38■□□□□ 0.05
PTPN4-207ENST00000460162 SAPCD1Q5SSQ6 148 aa15.38■□□□□ 0.05
PTPN4-207ENST00000460162 PRNTQ86SH4 94 aa15.38■□□□□ 0.05
PTPN4-207ENST00000460162 SLC25A29Q8N8R3 303 aa15.38■□□□□ 0.05
PTPN4-207ENST00000460162 INO80EQ8NBZ0 244 aaPredicted RBP15.38■□□□□ 0.05
PTPN4-207ENST00000460162 PRADC1Q9BSG0 188 aa15.38■□□□□ 0.05
PTPN4-207ENST00000460162 IGHV3-38A0A0C4DH36 116 aa15.37■□□□□ 0.05
PTPN4-207ENST00000460162 A0A1W2PRE2 83 aa15.37■□□□□ 0.05
PTPN4-207ENST00000460162 LINC01556Q5JQF7 62 aa15.37■□□□□ 0.05
PTPN4-207ENST00000460162 RNF222A6NCQ9 220 aa15.36■□□□□ 0.05
PTPN4-207ENST00000460162 FUSP35637 526 aaKnown RBP eCLIP15.36■□□□□ 0.05
PTPN4-207ENST00000460162 Q5BKY6 102 aa15.36■□□□□ 0.05
PTPN4-207ENST00000460162 ZNF506Q5JVG8 444 aa15.36■□□□□ 0.05
PTPN4-207ENST00000460162 DPPA3Q6W0C5 159 aa15.36■□□□□ 0.05
PTPN4-207ENST00000460162 BORCS7-ASMTA0A0B4J1R7 106 aa15.35■□□□□ 0.05
PTPN4-207ENST00000460162 MGST1P10620 155 aaKnown RBP15.35■□□□□ 0.05
PTPN4-207ENST00000460162 RNASE3P12724 160 aaKnown RBP15.35■□□□□ 0.05
PTPN4-207ENST00000460162 RPL7L1Q6DKI1 246 aaKnown RBP15.35■□□□□ 0.05
PTPN4-207ENST00000460162 TRAV8-6A0A0B4J262 113 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms