RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 KRTAP17-1Q9BYP8 105 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 KRTAP9-2Q9BYQ4 174 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 LIME1Q9H400 295 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 NXT2Q9NPJ8 142 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 CKLFQ9UBR5 152 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 TAC3Q9UHF0 121 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV5-52A0A0A0MRZ9 124 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 ZFP92A6NM28 416 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 A8MUN3 132 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 H0YGG7 62 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 NDUFS5O43920 106 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF136P52737 540 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 CCL8P80075 99 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 INSL4Q14641 139 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 CLEC19AQ6UXS0 136 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 VN1R4Q7Z5H5 301 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 Q8N2B8 174 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 TMEM230Q96A57 120 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 CTSZQ9UBR2 303 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 SVILO95425 2214 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 IGKV1D-43A0A0B4J1Z2 117 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 MRPS36P82909 103 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 SSBP1Q04837 148 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 DEFB110Q30KQ9 67 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 NSUN5P1Q3KNT7 163 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 RFESDQ8TAC1 157 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 LYZL4Q96KX0 146 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 SMIM7Q9BQ49 75 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 MOB4Q9Y3A3 225 aa3.62□□□□□ -1.83
CCDC88A-209ENST00000456975 TRAV1-2A0A0B4J238 106 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV5-39A0A0G2JS06 123 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 TRBV27A0A0K0K1C4 114 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 PGPA6NDG6 321 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 NDUFB3O43676 98 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF73O43830 326 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 LGALS3P17931 250 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 OR5AS1Q8N127 324 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 MGST2Q99735 147 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 POLQO75417 2590 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 HIVEP3Q5T1R4 2406 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 LRBAP50851 2863 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 CRYBG3Q68DQ2 2970 aa3.61□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV3-12A0A075B6K2 115 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 IGKV1D-13A0A0B4J2D9 117 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 KRTAP4-8A0A0G2JLE6 195 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 KRTAP9-6A0A140TA67 174 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 RBMY1BA6NDE4 496 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 RBMY1EA6NEQ0 496 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 M0R381 172 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 LST1O00453 97 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 RBMY1DP0C7P1 496 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 RBMY1A1P0DJD3 496 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 IGKV1-13P0DP09 117 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF80P51504 273 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 FXYD2P54710 66 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 HERVK_113P61574 105 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 HIST1H4AP62805 103 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 HBBP68871 147 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 Q6ZS49 121 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 LINC00337Q8N6G1 96 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 LINC01600Q96MT4 127 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 TIMM17AQ99595 171 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 HDHD3Q9BSH5 251 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 V9GY05 133 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 TRAV8-3A0A0A6YYJ7 113 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 UBE2L6O14933 153 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 SLC25A16P16260 332 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 UBE2L3P68036 154 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF678Q5SXM1 525 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 FAM219BQ5XKK7 198 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 PHF5AQ7RTV0 110 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 SERP2Q8N6R1 65 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 PRSS3P2Q8NHM4 247 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 H1FXQ92522 213 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 C2orf50Q96LR7 162 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF286AQ9HBT8 521 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 CALYQ9NYX4 217 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 HEATR5BQ9P2D3 2071 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 PCNX1Q96RV3 2341 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 MED12LQ86YW9 2145 aa3.6□□□□□ -1.83
CCDC88A-209ENST00000456975 TRBV20OR9-2A0A075B6H5 130 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV9-49A0A0B4J1Y8 123 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 UBE2L5PA0A1B0GUS4 154 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 KLLNB2CW77 178 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 H0Y9J4 135 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 K7ERJ3 54 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 TIMM17BO60830 172 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 Q0VFX4 171 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 DEFB109BQ30KR1 87 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 GVQW1Q8N7I0 195 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 Q9H3A6 140 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 Q9HAA7 133 aa3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 NHP2Q9NX24 153 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-209ENST00000456975 TMEM256-PLSCR3K7ERE1 68 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 BMPR1BO00238 502 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 UPK2O00526 184 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 STATHP02808 62 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 RIGQ13278 110 aa3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms