RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 RPL35P42766 123 aaKnown RBP6.35□□□□□ -1.39
SYNE1-214ENST00000454018 BTN1A1Q13410 526 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 PRR9Q5T870 116 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 Q6AWC8 147 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 LINC00479Q96M42 142 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 SMDT1Q9H4I9 107 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 SMIM9A6NGZ8 99 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 H7BYZ3 331 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 RBMY1A1P0DJD3 496 aaKnown RBP6.35□□□□□ -1.39
SYNE1-214ENST00000454018 RBMY1CP0DJD4 496 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 MIFP14174 115 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 TAS2R60P59551 318 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 RBMY1FQ15415 496 aaKnown RBP6.35□□□□□ -1.39
SYNE1-214ENST00000454018 ANXA2RQ3ZCQ2 193 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 SMUG1Q53HV7 270 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 C1orf158Q8N1D5 194 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 OR11H2Q8NH07 326 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 TVP23CQ96ET8 276 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 SMIM12Q96EX1 92 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 PYGO2Q9BRQ0 406 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 DERL1Q9BUN8 251 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 MED9Q9NWA0 146 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 IGHV3OR16-12A0A075B7B8 117 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 TRAV12-3A0A0B4J271 114 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 RNASE4P34096 147 aaKnown RBP6.34□□□□□ -1.39
SYNE1-214ENST00000454018 PEA15Q15121 130 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 CENPWQ5EE01 88 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 COX8CQ7Z4L0 72 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 TMEM183AQ8IXX5 376 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 C8orf49Q96NF6 230 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 C11orf68Q9H3H3 251 aaKnown RBP6.34□□□□□ -1.39
SYNE1-214ENST00000454018 U3KQK5 164 aa6.34□□□□□ -1.39
SYNE1-214ENST00000454018 TRAV21A0A0B4J279 112 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 RAB19A4D1S5 217 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 CXorf65A6NEN9 183 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 C9JCJ5 164 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF324O75467 553 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-214ENST00000454018 GCGP01275 180 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 PFN1P07737 140 aaKnown RBP6.33□□□□□ -1.4
SYNE1-214ENST00000454018 GNG4P50150 75 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 RRN3P1Q2M238 152 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 BAGE2Q86Y30 109 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 Q8NAQ8 132 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 LINC01587Q99440 93 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 LINC00467Q9BRT7 94 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 PARLQ9H300 379 aa6.33□□□□□ -1.4
SYNE1-214ENST00000454018 TMEM189A5PLL7 270 aa6.32□□□□□ -1.4
SYNE1-214ENST00000454018 SRP19P09132 144 aaKnown RBP6.32□□□□□ -1.4
SYNE1-214ENST00000454018 FAM162BQ5T6X4 162 aa6.32□□□□□ -1.4
SYNE1-214ENST00000454018 TMEM263Q8WUH6 116 aaKnown RBP6.32□□□□□ -1.4
SYNE1-214ENST00000454018 C16orf74Q96GX8 76 aa6.32□□□□□ -1.4
SYNE1-214ENST00000454018 ZC2HC1AQ96GY0 325 aa6.32□□□□□ -1.4
SYNE1-214ENST00000454018 MLST8Q9BVC4 326 aa6.32□□□□□ -1.4
SYNE1-214ENST00000454018 DNAH9Q9NYC9 4486 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 TRBV20OR9-2A0A075B6H5 130 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 IGHV1OR15-1A0A075B7D0 117 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 IGHV4-28A0A0C4DH34 117 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF80P51504 273 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-214ENST00000454018 CEBPGP53567 150 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 TDRG1Q3Y452 100 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 FAM159AQ6UWV7 190 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF493Q6ZR52 646 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 EIF4E3Q8N5X7 224 aaKnown RBP6.31□□□□□ -1.4
SYNE1-214ENST00000454018 NHLRC2Q8NBF2 726 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 SMIM7Q9BQ49 75 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 BIN3Q9NQY0 253 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 MUC4Q99102 2169 aa6.31□□□□□ -1.4
SYNE1-214ENST00000454018 FABP5P3A8MUU1 101 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 HTN1P15515 57 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 FAM74A3Q4VXF1 159 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 UQCC3Q6UW78 93 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 RNASE8Q8TDE3 154 aaKnown RBP6.3□□□□□ -1.4
SYNE1-214ENST00000454018 KCNS1Q96KK3 526 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 SDF2L1Q9HCN8 221 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 NAGKQ9UJ70 344 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 LY96Q9Y6Y9 160 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 NACAE9PAV3 2078 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 A0A0J9YWU9 116 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 TEX48A0A1B0GUV7 120 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF727A8MUV8 499 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF705GA8MUZ8 300 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-214ENST00000454018 SH2D1AO60880 128 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 IGLV2-8P01709 118 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 MGST1P10620 155 aaKnown RBP6.3□□□□□ -1.4
SYNE1-214ENST00000454018 MUC21Q5SSG8 566 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 IBA57Q5T440 356 aaKnown RBP6.3□□□□□ -1.4
SYNE1-214ENST00000454018 Q6ZQT7 251 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 WWC2-AS2Q96NR7 200 aa6.3□□□□□ -1.4
SYNE1-214ENST00000454018 HUWE1Q7Z6Z7 4374 aaKnown RBP6.29□□□□□ -1.4
SYNE1-214ENST00000454018 LINC00862A6NCI5 91 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 C9JQL5 133 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 ZNF415Q09FC8 603 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 SOHLH1Q5JUK2 328 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 PRR27Q6MZM9 219 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 COMMD7Q86VX2 200 aa6.29□□□□□ -1.4
SYNE1-214ENST00000454018 PLAC8L1A1L4L8 177 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 SNURFLB1AK76 121 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 DEFB4AO15263 64 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 TYMSP04818 313 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 SFTA3P0C7M3 94 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms