RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 B9D2Q9BPU9 175 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 WFDC1Q9HC57 220 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 J3QRE1 110 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 FAM104BQ5XKR9 115 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 LINC00311Q8N616 119 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 MESP1Q9BRJ9 268 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 U3KQE9 123 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 PTPRQQ9UMZ3 2332 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 PRB4P10163 310 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-204ENST00000423058 C5orf47Q569G3 176 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 PPDPFLQ8WWR9 84 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 TRBV19A0A075B6N1 114 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 G3V318 75 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 H0YIZ8 118 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 GYPEP15421 78 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 RBM3P98179 157 aaKnown RBP5.46□□□□□ -1.53
SCN1A-204ENST00000423058 MORN5Q5VZ52 161 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 C17orf82Q86X59 251 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-204ENST00000423058 VSIRQ9H7M9 311 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 RBAKDNA6NC62 111 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 Q6ZQT7 251 aa5.46□□□□□ -1.53
SCN1A-204ENST00000423058 PNRC2Q9NPJ4 139 aaKnown RBP5.46□□□□□ -1.53
SCN1A-204ENST00000423058 ATP5G1P05496 136 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 TEX36Q5VZQ5 186 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 LHFPL1Q86WI0 220 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 ANKRD29Q8N6D5 301 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 RSPO3Q9BXY4 272 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-204ENST00000423058 SIGLEC8Q9NYZ4 499 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 PRSS47A8MTI9 375 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV2-5P01817 119 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 BAALCQ8WXS3 180 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 PROP1O75360 226 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 HOXB4P17483 251 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-204ENST00000423058 POU2AF1Q16633 256 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 LOC105371267A0A1B0GV96 52 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 LYPD3O95274 346 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 ZNF493Q6ZR52 646 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 LENEPQ9Y5L5 61 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 A0A1B0GX51 115 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 F6UB75 175 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 H3BRN7 92 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 K7ERS5 55 aa5.46□□□□□ -1.54
SCN1A-204ENST00000423058 PRR30Q53SZ7 412 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-204ENST00000423058 F8VRH5 84 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 K7EQD1 137 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 WIPF2Q8TF74 440 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-204ENST00000423058 GTSF1LQ9H1H1 148 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 C14orf132Q9NPU4 83 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 SPG11Q96JI7 2443 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 HIST3H2BBQ8N257 126 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 PRSS33Q8NF86 280 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 VSIG2Q96IQ7 327 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 LTAP01374 205 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 INSL3P51460 131 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 ATP6V0E2Q8NHE4 81 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 B3GALT5-AS1P59052 145 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 PRR25Q96S07 402 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 SMAD5-AS1Q9Y6J3 95 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 AGRNO00468 2067 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 NDUFA1O15239 70 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 MRPL51Q4U2R6 128 aaKnown RBP5.45□□□□□ -1.54
SCN1A-204ENST00000423058 VOPP1Q96AW1 172 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 EXPH5Q8NEV8 1989 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 ACYP1P07311 99 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 LYL1P12980 280 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 HIGD2BQ4VC39 106 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 CEND1Q8N111 149 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 RNF183Q96D59 192 aa5.45□□□□□ -1.54
SCN1A-204ENST00000423058 UBE2V1Q13404 147 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 WFDC9Q8NEX5 89 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 PCNX3Q9H6A9 2034 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 IGKV1D-8A0A087WSZ0 117 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 SHISA3A0PJX4 238 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 CXCL5P42830 114 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 Q0VG73 95 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 LY6G6FQ5SQ64 297 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 SEM1Q6ZVN7 128 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 HHLA3Q9XRX5 114 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 KIR2DL5BA0A0G2JN68 375 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 KIR2DL5BA0A0G2JPC4 375 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 TINCRA0A1B0GVN0 87 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 KIR2DL5AQ8N109 375 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 CARD19Q96LW7 228 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 C3orf79P0CE67 100 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 GFI1Q99684 422 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 J3QQQ9 107 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 CASC2Q6XLA1 102 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 ALPK3Q96L96 1907 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 H0YGX0 51 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 DEFB112Q30KQ8 113 aa5.44□□□□□ -1.54
SCN1A-204ENST00000423058 NREPQ16612 68 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 ETV2O00321 342 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-204ENST00000423058 NDUFC2O95298 119 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 FAM120AOSQ5T036 256 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 OPRPNQ99935 248 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-204ENST00000423058 THSD7BQ9C0I4 1608 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 IGLV2-23P01705 113 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 Q6ZVH6 145 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 GPHB5Q86YW7 130 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 C17orf77Q96MU5 243 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms