RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SLC25A16P16260 332 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 ASIPP42127 132 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 HIST1H4AP62805 103 aaKnown RBP2.64□□□□□ -1.99
HMGB1-204ENST00000399489 GTF3C1Q12789 2109 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 FOXF1Q12946 379 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 DEFB116Q30KQ4 102 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 DEFB123Q8N688 67 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 CYB561D1Q8N8Q1 229 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 CNEP1R1Q8N9A8 125 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF431Q8TF32 576 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-204ENST00000399489 DIRC1Q969H9 104 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 LSM10Q969L4 123 aaKnown RBP2.64□□□□□ -1.99
HMGB1-204ENST00000399489 RNF5Q99942 180 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 PAPPA2Q9BXP8 1791 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 TNFRSF19Q9NS68 423 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 ICOSQ9Y6W8 199 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 LRP4O75096 1905 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 ZFHX4Q86UP3 3567 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 IGKV1OR2-108A0A075B7D4 117 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 YPEL1O60688 119 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 LY6HO94772 140 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 UBL3O95164 117 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 MRPS36P82909 103 aaKnown RBP2.63□□□□□ -1.99
HMGB1-204ENST00000399489 HMGN3Q15651 99 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 UBE2SQ16763 222 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 LCE1CQ5T751 118 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 Q6ZS92 163 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 KRTAP5-5Q701N2 237 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-204ENST00000399489 MIR17HGQ75NE6 70 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 CLDND2Q8NHS1 167 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 DOCK4Q8N1I0 1966 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 ECM29Q5VYK3 1845 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 KIF20BQ96Q89 1820 aa2.63□□□□□ -1.99
HMGB1-204ENST00000399489 A0A0B4J2C4 111 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 LOC107986453A0A1B0GWG9 222 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 GRIFINA4D1Z8 144 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 M0R233 179 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SSSCA1O60232 199 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 HYPMO75409 117 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 IGHV3-7P01780 117 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SLC25A6P12236 298 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 PCBD1P61457 104 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 CDK5R1Q15078 307 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 ADIRFQ15847 76 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SMCR5Q8TEV8 140 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 S100A16Q96FQ6 103 aaKnown RBP2.62□□□□□ -1.99
HMGB1-204ENST00000399489 PKMYT1Q99640 499 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 TP53TG3Q9ULZ0 132 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SSC5DA1L4H1 1573 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 COL1A1P02452 1464 aaPredicted RBP2.62□□□□□ -1.99
HMGB1-204ENST00000399489 MDFIC2A0A1B0GVS7 189 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 RBAKDNA6NC62 111 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 GNGT2O14610 69 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 COX7CP15954 63 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 KRTAP10-8P60410 259 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SPRNQ5BIV9 151 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 MIC13Q5XKP0 118 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 NOXRED1Q6NXP6 359 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SOSTDC1Q6X4U4 206 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 SDIM1Q6ZPB5 146 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 TRAPPC1Q9Y5R8 145 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 DSCAMO60469 2012 aa2.62□□□□□ -1.99
HMGB1-204ENST00000399489 CACNA1AO00555 2505 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 ARAP2Q8WZ64 1704 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 CROCCQ5TZA2 2017 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 MYH9P35579 1960 aaKnown RBP2.61□□□□□ -1.99
HMGB1-204ENST00000399489 IGHV3-73A0A0B4J1V6 119 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 NPYP01303 97 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 COX6A1P12074 109 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 FUSP35637 526 aaKnown RBP eCLIP2.61□□□□□ -1.99
HMGB1-204ENST00000399489 MPV17P39210 176 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 HINT1P49773 126 aaPredicted RBP2.61□□□□□ -1.99
HMGB1-204ENST00000399489 CIRBPQ14011 172 aaKnown RBP2.61□□□□□ -1.99
HMGB1-204ENST00000399489 MIAQ16674 131 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 OR5AS1Q8N127 324 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 Q8N2B8 174 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 TMEM105Q8N8V8 129 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 MUC7Q8TAX7 377 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 C10orf105Q8TEF2 133 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 SCGB3A1Q96QR1 104 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 DSCR8Q96T75 97 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 SMDT1Q9H4I9 107 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 RABAC1Q9UI14 185 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 ABCA7Q8IZY2 2146 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 KDM3BQ7LBC6 1761 aa2.61□□□□□ -1.99
HMGB1-204ENST00000399489 DENND4CQ5VZ89 1909 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 PLIN4Q96Q06 1357 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 NUP210LQ5VU65 1888 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 AGRNO00468 2067 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 TDRD6O60522 2096 aaKnown RBP2.6□□□□□ -1.99
HMGB1-204ENST00000399489 IGHV3-15A0A0B4J1V0 119 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF736B4DX44 427 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-204ENST00000399489 PROSCO94903 275 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 CFDP00746 253 aaPredicted RBP2.6□□□□□ -1.99
HMGB1-204ENST00000399489 BLCAPP62952 87 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 SEC11AP67812 179 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 KRTAP13-3Q3SY46 172 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 DPPA3Q6W0C5 159 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 LYZL2Q7Z4W2 148 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms