RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 NPBQ8NG41 125 aa10.32□□□□□ -0.76
NPHP4-203ENST00000378169 OR13C6PQ8NH95 151 aa10.32□□□□□ -0.76
NPHP4-203ENST00000378169 IGHV1-24A0A0C4DH33 117 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 VCYO14598 125 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 NEGR1Q7Z3B1 354 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 SPOCK3Q9BQ16 436 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 COL6A3P12111 3177 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 BCL6BQ8N143 479 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-203ENST00000378169 TRAV2A0A0B4J234 112 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 CHCHD5Q9BSY4 110 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 ACANP16112 2415 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 C19orf84I3L1E1 186 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 SIGLEC8Q9NYZ4 499 aa10.31□□□□□ -0.76
NPHP4-203ENST00000378169 C10orf105Q8TEF2 133 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 A0A1B0GWB2 263 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 IGHV7-4-1A0A0J9YVY3 117 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 H3BRM9 83 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 RNASE1P07998 156 aaKnown RBP10.3□□□□□ -0.76
NPHP4-203ENST00000378169 ZNF415Q09FC8 603 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 SNHG12Q9BXW3 62 aa10.3□□□□□ -0.76
NPHP4-203ENST00000378169 IGLL1P15814 213 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 ZNF503Q96F45 646 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 IGHV3-16A0A0C4DH30 117 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 DEFB1P60022 68 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 MSRB1Q9NZV6 116 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 SMPXQ9UHP9 88 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 HSD52Q0P140 79 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 EIF4EBP1Q13541 118 aaPredicted RBP10.29□□□□□ -0.76
NPHP4-203ENST00000378169 MAJINQ3KP22 176 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 FANCD2OSQ96PS1 177 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 C20orf144Q9BQM9 153 aa10.29□□□□□ -0.76
NPHP4-203ENST00000378169 IGKV1D-37A0A075B6S9 117 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 BUB3O43684 328 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 C2orf66Q6UXQ4 117 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 C1orf159Q96HA4 380 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 LINC00574Q9H8X3 128 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 IGLC2P0DOY2 106 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 IGLC3P0DOY3 106 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 GATA1P15976 413 aaPredicted RBP10.28□□□□□ -0.76
NPHP4-203ENST00000378169 AJUBAQ96IF1 538 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 PRAC2D3DTV9 90 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 GNRH2O43555 120 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 INSP01308 110 aa10.28□□□□□ -0.76
NPHP4-203ENST00000378169 LINC01548A6NM66 108 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 LINC01619G3V211 115 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 DEFB130BP0DP73 79 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 DEFB130AP0DP74 79 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 CDKN1BP46527 198 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 OR9G4Q8NGQ1 327 aa10.27□□□□□ -0.76
NPHP4-203ENST00000378169 J3QKU1 62 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 C5orf56Q8N8D9 126 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 CFHR4Q92496 578 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 NPC2P61916 151 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 RPL36AP83881 106 aaKnown RBP10.27□□□□□ -0.77
NPHP4-203ENST00000378169 RPL36ALQ969Q0 106 aaKnown RBP10.27□□□□□ -0.77
NPHP4-203ENST00000378169 IGF2BP2-AS1Q96M15 143 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 VPREB3Q9UKI3 123 aa10.27□□□□□ -0.77
NPHP4-203ENST00000378169 J3QLI3 93 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 SEC11AP67812 179 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 SIRPDQ9H106 197 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 SDHAF1A6NFY7 115 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 INS-IGF2F8WCM5 200 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 HOXD3P31249 432 aaPredicted RBP10.26□□□□□ -0.77
NPHP4-203ENST00000378169 LMO4P61968 165 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 COA6Q5JTJ3 125 aaKnown RBP10.26□□□□□ -0.77
NPHP4-203ENST00000378169 CRYGCP07315 174 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 GTSF1Q8WW33 167 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 TP53TG1Q9Y2A0 90 aa10.26□□□□□ -0.77
NPHP4-203ENST00000378169 IGHV1OR15-1A0A075B7D0 117 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 CFHR3Q02985 330 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 TDRG1Q3Y452 100 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 ZNF479Q96JC4 524 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 CDSNQ15517 529 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 SPTBN5Q9NRC6 3674 aaKnown RBP10.25□□□□□ -0.77
NPHP4-203ENST00000378169 TRAV13-1A0A0B4J241 112 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 DLEU1O43261 78 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 ELANEP08246 267 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 PLNP26678 52 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 MEGF9Q9H1U4 602 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 SPXQ9BT56 116 aa10.25□□□□□ -0.77
NPHP4-203ENST00000378169 ADARB2-AS1A8MUL3 147 aa10.24□□□□□ -0.77
NPHP4-203ENST00000378169 LINC01559Q495D7 138 aa10.24□□□□□ -0.77
NPHP4-203ENST00000378169 TEX43Q6ZNM6 134 aa10.24□□□□□ -0.77
NPHP4-203ENST00000378169 Q8N8P6 123 aa10.24□□□□□ -0.77
NPHP4-203ENST00000378169 WIPF2Q8TF74 440 aaPredicted RBP10.24□□□□□ -0.77
NPHP4-203ENST00000378169 LINC00173Q6ZV60 143 aa10.23□□□□□ -0.77
NPHP4-203ENST00000378169 TRBV12-3P01733 135 aa10.23□□□□□ -0.77
NPHP4-203ENST00000378169 SAMD5Q5TGI4 173 aa10.23□□□□□ -0.77
NPHP4-203ENST00000378169 MRPL35Q9NZE8 188 aaKnown RBP10.23□□□□□ -0.77
NPHP4-203ENST00000378169 IGHV3-38A0A0C4DH36 116 aa10.23□□□□□ -0.77
NPHP4-203ENST00000378169 DEFB113Q30KQ7 82 aa10.23□□□□□ -0.77
NPHP4-203ENST00000378169 DNAL4O96015 105 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 PCP4P48539 62 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 UNQ9165/PRO28630Q6UXU0 137 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 SMIM2Q9BVW6 85 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 KLF2Q9Y5W3 355 aaPredicted RBP10.22□□□□□ -0.77
NPHP4-203ENST00000378169 LY6G5BQ8NDX9 201 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 SLURP1P55000 103 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 KIR3DS1Q14943 382 aa10.22□□□□□ -0.77
NPHP4-203ENST00000378169 WI2-2373I1.2A0A1W2PRP0 233 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms