RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PSMG3-AS1Q96PY0 264 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 HIF1ANQ9NWT6 349 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 CUL9Q8IWT3 2517 aa12.21□□□□□ -0.46
CKAP4-201ENST00000378026 M0R381 172 aa12.2□□□□□ -0.46
CKAP4-201ENST00000378026 LY6HO94772 140 aa12.2□□□□□ -0.46
CKAP4-201ENST00000378026 TSPAN13O95857 204 aa12.2□□□□□ -0.46
CKAP4-201ENST00000378026 C5orf64Q2M2E5 130 aa12.2□□□□□ -0.46
CKAP4-201ENST00000378026 SRSF8Q9BRL6 282 aaKnown RBP12.2□□□□□ -0.46
CKAP4-201ENST00000378026 PRSS29PA6NIE9 313 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 KIR2DL4Q99706 377 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 RIF1Q5UIP0 2472 aaKnown RBP12.19□□□□□ -0.46
CKAP4-201ENST00000378026 IGHV7-4-1A0A0J9YVY3 117 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 LY6LH3BQJ8 138 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 RPL39LQ96EH5 51 aaKnown RBP12.19□□□□□ -0.46
CKAP4-201ENST00000378026 CARD19Q96LW7 228 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 PLA2G2CQ5R387 149 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 DEFB124Q8NES8 71 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 DPM3Q9P2X0 92 aa12.19□□□□□ -0.46
CKAP4-201ENST00000378026 RNF5Q99942 180 aa12.18□□□□□ -0.46
CKAP4-201ENST00000378026 SMIM2Q9BVW6 85 aa12.18□□□□□ -0.46
CKAP4-201ENST00000378026 SS18L2Q9UHA2 77 aa12.18□□□□□ -0.46
CKAP4-201ENST00000378026 SPTBN1Q01082 2364 aaKnown RBP12.17□□□□□ -0.46
CKAP4-201ENST00000378026 SRSF2Q01130 221 aaKnown RBP12.17□□□□□ -0.46
CKAP4-201ENST00000378026 ZNF48Q96MX3 618 aaPredicted RBP12.17□□□□□ -0.46
CKAP4-201ENST00000378026 TMEM238LA0A1B0GVL6 79 aa12.17□□□□□ -0.46
CKAP4-201ENST00000378026 A6NJY4 79 aa12.17□□□□□ -0.46
CKAP4-201ENST00000378026 MGPP08493 103 aa12.17□□□□□ -0.46
CKAP4-201ENST00000378026 SCGB1C2P0DMR2 95 aa12.17□□□□□ -0.46
CKAP4-201ENST00000378026 FAM57AQ8TBR7 257 aa12.17□□□□□ -0.46
CKAP4-201ENST00000378026 ANKRD11Q6UB99 2663 aaPredicted RBP12.16□□□□□ -0.46
CKAP4-201ENST00000378026 TCL1BO95988 128 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 IGF1P05019 195 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 CLEC3BP05452 202 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 ANXA2RQ3ZCQ2 193 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 C14orf178Q8N769 122 aaPredicted RBP12.16□□□□□ -0.46
CKAP4-201ENST00000378026 C2orf66Q6UXQ4 117 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 NEXN-AS1Q8NBZ9 246 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 BAALCQ8WXS3 180 aa12.16□□□□□ -0.46
CKAP4-201ENST00000378026 ECSCRQ19T08 205 aa12.15□□□□□ -0.46
CKAP4-201ENST00000378026 RASL10AQ92737 203 aa12.15□□□□□ -0.46
CKAP4-201ENST00000378026 ANAPC13Q9BS18 74 aa12.15□□□□□ -0.46
CKAP4-201ENST00000378026 TRAV12-1A0A0B4J245 112 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 SUMO2P61956 95 aaKnown RBP12.14□□□□□ -0.47
CKAP4-201ENST00000378026 ZNF672Q499Z4 452 aaPredicted RBP12.14□□□□□ -0.47
CKAP4-201ENST00000378026 PPDPFLQ8WWR9 84 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 MSRB2Q9Y3D2 182 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 BUB3O43684 328 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 C15orf32Q32M92 178 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 AKAP13Q12802 2813 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 H7C2G1 150 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 ATP6V0E2Q8NHE4 81 aa12.14□□□□□ -0.47
CKAP4-201ENST00000378026 PRTN3P24158 256 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 DEFB1P60022 68 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 ORMDL2Q53FV1 153 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 TEN1Q86WV5 123 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 NPBQ8NG41 125 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 TOMM6Q96B49 74 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 FAM90A27PA6NNH2 459 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 S100A4P26447 101 aaKnown RBP12.13□□□□□ -0.47
CKAP4-201ENST00000378026 PRR9Q5T870 116 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 CLEC19AQ6UXS0 136 aa12.13□□□□□ -0.47
CKAP4-201ENST00000378026 UBE2D1P51668 147 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 Q6ZS46 218 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 Q6ZS92 163 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 SPTA1P02549 2419 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 A8MWV9 139 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 SCGB2A1O75556 95 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 ARL3P36405 182 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 ANKRD29Q8N6D5 301 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 RAX2Q96IS3 184 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 NDUFA11Q86Y39 141 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 ERG28Q9UKR5 140 aa12.12□□□□□ -0.47
CKAP4-201ENST00000378026 DUSP14O95147 198 aaKnown RBP12.11□□□□□ -0.47
CKAP4-201ENST00000378026 TRAV8-2A0A0B4J237 113 aa12.11□□□□□ -0.47
CKAP4-201ENST00000378026 SLC50A1Q9BRV3 221 aa12.11□□□□□ -0.47
CKAP4-201ENST00000378026 B5MCH6 92 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 LINC01619G3V211 115 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 CD7P09564 240 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 UBE2D3P61077 147 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 UBE2D2P62837 147 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 C11orf86A6NJI1 115 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 ZNF688P0C7X2 276 aa12.1□□□□□ -0.47
CKAP4-201ENST00000378026 OR11H6Q8NGC7 330 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 TEX29Q8N6K0 151 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 CFC1BP0CG36 223 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 CFC1P0CG37 223 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 TMEM170BQ5T4T1 132 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 ZFAND6Q6FIF0 208 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 C16orf92Q96LL3 132 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 ZFAND3Q9H8U3 227 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 PHLDA3Q9Y5J5 127 aa12.09□□□□□ -0.47
CKAP4-201ENST00000378026 BSNQ9UPA5 3926 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 AKAP6Q13023 2319 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 IGHV7-81A0A0B4J1V7 117 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.08□□□□□ -0.48
CKAP4-201ENST00000378026 RBAKDNA6NC62 111 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 COX6B1P14854 86 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 CRIP2P52943 208 aaPredicted RBP12.08□□□□□ -0.48
CKAP4-201ENST00000378026 TRPT1Q86TN4 253 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms