RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 DEFB131AP59861 70 aa5.87□□□□□ -1.47
SYNE1-208ENST00000367256 WFDC9Q8NEX5 89 aa5.87□□□□□ -1.47
SYNE1-208ENST00000367256 IGHV1OR15-1A0A075B7D0 117 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 EFNA2O43921 213 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 DOPEY1Q5JWR5 2465 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 J3QQQ9 107 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 CLPSP04118 112 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 ATP5G1P05496 136 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 ATG2AQ2TAZ0 1938 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 IGHV3-38A0A0C4DH36 116 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 ETV2O00321 342 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-208ENST00000367256 NTN3O00634 580 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-208ENST00000367256 ZFP36L1Q07352 338 aaKnown RBP5.86□□□□□ -1.47
SYNE1-208ENST00000367256 ATP6V0E1O15342 81 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 PKIGQ9Y2B9 76 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 TRBV19A0A075B6N1 114 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 IGLL1P15814 213 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 SIGLEC8Q9NYZ4 499 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 FAM110DQ8TAY7 271 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-208ENST00000367256 NDUFA4L2Q9NRX3 87 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 RHOHQ15669 191 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 H3BMG7 143 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 FUSP35637 526 aaKnown RBP eCLIP5.86□□□□□ -1.47
SYNE1-208ENST00000367256 CRYBA4P53673 196 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 RUSC1-AS1Q66K80 236 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 SMIM2Q9BVW6 85 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 SS18L2Q9UHA2 77 aa5.86□□□□□ -1.47
SYNE1-208ENST00000367256 UBE2BP63146 152 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 RPL18AQ02543 176 aaKnown RBP5.85□□□□□ -1.47
SYNE1-208ENST00000367256 RNASE13Q5GAN3 156 aaKnown RBP5.85□□□□□ -1.47
SYNE1-208ENST00000367256 Q6ZRM9 215 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 DEFB125Q8N687 156 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 C20orf173Q96LM9 149 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-208ENST00000367256 RS1O15537 224 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 TRAV12-2A0A075B6T6 113 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 BAALCQ8WXS3 180 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 ZC2HC1AQ96GY0 325 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 C17orf82Q86X59 251 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-208ENST00000367256 Q8TCH9 128 aa5.85□□□□□ -1.47
SYNE1-208ENST00000367256 IGKV1-39P01597 117 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 ANGP03950 147 aaKnown RBP5.84□□□□□ -1.47
SYNE1-208ENST00000367256 IGKV1D-39P04432 117 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 DKK4Q9UBT3 224 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 XCL1P47992 114 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 ZNF493Q6ZR52 646 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 DEFB105AQ8NG35 78 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 TEX36Q5VZQ5 186 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 LYPD2Q6UXB3 125 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 F6UB75 175 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 GATA3P23771 443 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 MRPL35Q9NZE8 188 aaKnown RBP5.84□□□□□ -1.47
SYNE1-208ENST00000367256 LINC00311Q8N616 119 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 ZNRF2Q8NHG8 242 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 ZNF581Q9P0T4 197 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 LENEPQ9Y5L5 61 aa5.84□□□□□ -1.47
SYNE1-208ENST00000367256 NPYP01303 97 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 Q6ZVH6 145 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 IGHV4-4A0A075B6R2 117 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 PRB2P02812 416 aaPredicted RBP5.84□□□□□ -1.48
SYNE1-208ENST00000367256 ZNF833PQ6ZTB9 187 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 SLC25A29Q8N8R3 303 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 C1orf43Q9BWL3 253 aa5.84□□□□□ -1.48
SYNE1-208ENST00000367256 GNLYP22749 145 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 MP68P56378 58 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 LINC00205P59089 165 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 MDS2Q8NDY4 140 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 IGF2BP2-AS1Q96M15 143 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 NOTCH2Q04721 2471 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 BPESC1Q9GZL8 116 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 H3BRN7 92 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 Q0VFX4 171 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 A0A0G2JRQ6 117 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 COL8A2P25067 703 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 MRPL53Q96EL3 112 aaKnown RBP5.83□□□□□ -1.48
SYNE1-208ENST00000367256 HIGD1BQ9P298 99 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 CSRP1P21291 193 aaKnown RBP5.83□□□□□ -1.48
SYNE1-208ENST00000367256 ATOX1O00244 68 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 FHL1Q13642 323 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 SMIM20Q8N5G0 67 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 RBAKDNA6NC62 111 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 UBE2E1P51965 193 aa5.83□□□□□ -1.48
SYNE1-208ENST00000367256 TIRAPP58753 221 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 VWCEQ96DN2 955 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 IGKV1-6A0A0C4DH72 117 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 C5orf63A6NC05 138 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 LTAP01374 205 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 BAALC-AS2P0C853 105 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 C1orf147Q96MC9 270 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-208ENST00000367256 PRR25Q96S07 402 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 K7EM74 188 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 NDUFA4O00483 81 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 C12orf74Q32Q52 190 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 A0A096LPF7 62 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 IGLC7A0M8Q6 106 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 C8orf31Q8N9H6 132 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 ATP6V0E2Q8NHE4 81 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 Q9H8V8 135 aa5.82□□□□□ -1.48
SYNE1-208ENST00000367256 MBD3L4A6NDZ8 208 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-208ENST00000367256 MBD3L3A6NE82 208 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms