RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 MRPL23Q16540 153 aaKnown RBP12.64□□□□□ -0.39
COL18A1-203ENST00000359759 MUSTN1Q8IVN3 82 aa12.64□□□□□ -0.39
COL18A1-203ENST00000359759 ZNF747Q9BV97 191 aa12.64□□□□□ -0.39
COL18A1-203ENST00000359759 PRSS47A8MTI9 375 aa12.64□□□□□ -0.39
COL18A1-203ENST00000359759 LMO1P25800 156 aa12.64□□□□□ -0.39
COL18A1-203ENST00000359759 ZFP2Q6ZN57 461 aa12.64□□□□□ -0.39
COL18A1-203ENST00000359759 ICOSQ9Y6W8 199 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 IGHV3-30P01768 117 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 IGHV3-33P01772 117 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 IGHV3-30-3P0DP02 117 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 IGHV3-30-5P0DP03 117 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 RHOHQ15669 191 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 IGLC1P0CG04 106 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 Q6ZS92 163 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 LINC00173Q6ZV60 143 aa12.63□□□□□ -0.39
COL18A1-203ENST00000359759 FAM236AA0A1B0GUQ0 79 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 FAM236BA0A1B0GV22 79 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 PSMB8P28062 276 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 C8orf31Q8N9H6 132 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 C15orf65H3BRN8 121 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 NDUFC2O95298 119 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 Q8TCH9 128 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 NCOR1P1Q9H4R4 102 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 K7EM74 188 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 GATA3P23771 443 aa12.62□□□□□ -0.39
COL18A1-203ENST00000359759 FUSP35637 526 aaKnown RBP eCLIP12.62□□□□□ -0.396e-6■■■□□ 18
COL18A1-203ENST00000359759 IGLL5B9A064 214 aa12.61□□□□□ -0.39
COL18A1-203ENST00000359759 C17orf82Q86X59 251 aaPredicted RBP12.61□□□□□ -0.39
COL18A1-203ENST00000359759 IGLV3-9A0A075B6K5 115 aa12.61□□□□□ -0.39
COL18A1-203ENST00000359759 ESM1Q9NQ30 184 aa12.61□□□□□ -0.39
COL18A1-203ENST00000359759 A0A0B4J2C4 111 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 RBAKDNA6NC62 111 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 ARFGEF3Q5TH69 2177 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 TCF20Q9UGU0 1960 aaKnown RBP12.6□□□□□ -0.39
COL18A1-203ENST00000359759 TIRAPP58753 221 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 ZNF491Q8N8L2 437 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 VSIG2Q96IQ7 327 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 SIPA1L1O43166 1804 aa12.6□□□□□ -0.39
COL18A1-203ENST00000359759 ZNF503Q96F45 646 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 ZMAT4Q9H898 229 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 C11orf52Q96A22 123 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 CAMK2N2Q96S95 79 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 MED12Q93074 2177 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 E9PQ18 207 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 HOXB4P17483 251 aaPredicted RBP12.59□□□□□ -0.39
COL18A1-203ENST00000359759 HIST2H2BCQ6DN03 193 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 FOXI2Q6ZQN5 318 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 NPBQ8NG41 125 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 SND1-IT1Q9HBX3 110 aa12.59□□□□□ -0.39
COL18A1-203ENST00000359759 AGPAT4-IT1Q9H0P7 198 aa12.58□□□□□ -0.4
COL18A1-203ENST00000359759 HERV-K104P63124 156 aa12.58□□□□□ -0.4
COL18A1-203ENST00000359759 GYPEP15421 78 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 SRSF2Q01130 221 aaKnown RBP12.57□□□□□ -0.4
COL18A1-203ENST00000359759 HEATR5AQ86XA9 2040 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 ACYP1P07311 99 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 C9orf47Q6ZRZ4 202 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 J3QKU1 62 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 TDRG1Q3Y452 100 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 GREB1LQ9C091 1923 aaPredicted RBP12.57□□□□□ -0.4
COL18A1-203ENST00000359759 A4D1N5 150 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 NUPR1O60356 82 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 SLURP1P55000 103 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 TMEM61Q8N0U2 210 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 RNF183Q96D59 192 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 COL4A6Q14031 1691 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 DEFB125Q8N687 156 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 CLEC2BQ92478 149 aa12.57□□□□□ -0.4
COL18A1-203ENST00000359759 C1orf147Q96MC9 270 aaPredicted RBP12.57□□□□□ -0.4
COL18A1-203ENST00000359759 MP68P56378 58 aa12.56□□□□□ -0.4
COL18A1-203ENST00000359759 WFDC2Q14508 124 aa12.56□□□□□ -0.4
COL18A1-203ENST00000359759 NREPQ16612 68 aa12.56□□□□□ -0.4
COL18A1-203ENST00000359759 BRK1Q8WUW1 75 aa12.56□□□□□ -0.4
COL18A1-203ENST00000359759 K7EQD1 137 aa12.55□□□□□ -0.4
COL18A1-203ENST00000359759 ANKRD39Q53RE8 183 aa12.55□□□□□ -0.4
COL18A1-203ENST00000359759 IGHV4-59P01825 116 aa12.55□□□□□ -0.4
COL18A1-203ENST00000359759 MSRB1Q9NZV6 116 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 AKAP6Q13023 2319 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 LINC00311Q8N616 119 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 ZNF524Q96C55 264 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 A0A0J9YXV3 536 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 CCL24O00175 119 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 RPL39P62891 51 aaKnown RBP12.54□□□□□ -0.4
COL18A1-203ENST00000359759 ATOX1O00244 68 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 TTTY13Q9BZ97 58 aa12.54□□□□□ -0.4
COL18A1-203ENST00000359759 PRR20EP86478 221 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 PRR20CP86479 221 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 PRR20DP86480 221 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 PRR20BP86481 221 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 PRR20AP86496 221 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 SEM1Q6ZVN7 128 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 CEP250Q9BV73 2442 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 COX7A2LO14548 114 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 NDUFB1O75438 58 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 DEFB112Q30KQ8 113 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 RITA1Q96K30 269 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 PROK2Q9HC23 129 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 FXYD2P54710 66 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 J3KT08 172 aa12.53□□□□□ -0.4
COL18A1-203ENST00000359759 DOCK10Q96BY6 2186 aa12.52□□□□□ -0.41
COL18A1-203ENST00000359759 SPANXCQ9NY87 97 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms