RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CACNA1AO00555 2505 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 CCL21O00585 134 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 Q6ZRM9 215 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 CUL9Q8IWT3 2517 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 SMIM26A0A096LP01 95 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 CTRLP40313 264 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 UNQ6494/PRO21346Q6UXR6 183 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 CCL4P13236 92 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 FXYD7P58549 80 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 TRGV1A0A0A0MS02 117 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV3-66A0A0C4DH42 116 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV3-49A0A0A0MS15 119 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 UBE2AP49459 152 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 BSPH1Q075Z2 132 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 ACACBO00763 2458 aa10.08□□□□□ -0.8
COL6A3-203ENST00000353578 TET2Q6N021 2002 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-203ENST00000353578 COX7CP15954 63 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 A4D1N5 150 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 MED14OSP0DP75 135 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 SPINK2P20155 84 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 FDCSPQ8NFU4 85 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 SERP1Q9Y6X1 66 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 ZNF561-AS1K7EIQ3 104 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 NREPQ16612 68 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 CD59P13987 128 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 BUB3O43684 328 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 MT-ATP8P03928 68 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 ZNF883P0CG24 379 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 TOMM6Q96B49 74 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 K7ERS5 55 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 LINC00311Q8N616 119 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 METRNQ9UJH8 293 aa10.07□□□□□ -0.8
COL6A3-203ENST00000353578 NOTCH4Q99466 2003 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 RMI2Q96E14 147 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 SEC61GP60059 68 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV3-35A0A0C4DH35 117 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 IGLV3-19P01714 112 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 ODF1Q14990 250 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 ZNF833PQ6ZTB9 187 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 DAND5Q8N907 189 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 UPK3BQ9BT76 320 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 MCRIP2Q9BUT9 160 aaKnown RBP10.06□□□□□ -0.8
COL6A3-203ENST00000353578 PRR20EP86478 221 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 PRR20CP86479 221 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 PRR20DP86480 221 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 PRR20BP86481 221 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 PRR20AP86496 221 aa10.06□□□□□ -0.8
COL6A3-203ENST00000353578 FGFBP3Q8TAT2 258 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 BUB1B-PAK6H3BSN5 160 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 DYNAPQ8N1N2 210 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 COLCA1Q6ZS62 124 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 ANXA2RQ3ZCQ2 193 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 TDRG1Q3Y452 100 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 CCL19Q99731 98 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 TINCRA0A1B0GVN0 87 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV1-58A0A0C4DH39 117 aa10.05□□□□□ -0.8
COL6A3-203ENST00000353578 TEX36Q5VZQ5 186 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV1-2P23083 117 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 IGF2BP2-AS1Q96M15 143 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV1OR15-1A0A075B7D0 117 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 ETV2O00321 342 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-203ENST00000353578 IGHV3-23P01764 117 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 SMIM9A6NGZ8 99 aa10.04□□□□□ -0.8
COL6A3-203ENST00000353578 DSCAMO60469 2012 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 A0A087WWL8 130 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 DSCR9P59020 149 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 HIGD2BQ4VC39 106 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 Q9H8V8 135 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 ATP5J2P56134 94 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 A0A087WV48 116 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 BAALCQ8WXS3 180 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 MLST8Q9BVC4 326 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 COX7A2LO14548 114 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 PLA2G2FQ9BZM2 168 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 TP73-AS1Q9UF72 201 aa10.03□□□□□ -0.8
COL6A3-203ENST00000353578 C1orf147Q96MC9 270 aaPredicted RBP10.02□□□□□ -0.8
COL6A3-203ENST00000353578 VMO1Q7Z5L0 202 aa10.02□□□□□ -0.8
COL6A3-203ENST00000353578 C8orf49Q96NF6 230 aa10.02□□□□□ -0.8
COL6A3-203ENST00000353578 RPL18AQ02543 176 aaKnown RBP10.02□□□□□ -0.81
COL6A3-203ENST00000353578 FAM110DQ8TAY7 271 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-203ENST00000353578 BLCAPP62952 87 aa10.02□□□□□ -0.81
COL6A3-203ENST00000353578 A0A0G2JRQ6 117 aa10.02□□□□□ -0.81
COL6A3-203ENST00000353578 TCL1BO95988 128 aa10.02□□□□□ -0.81
COL6A3-203ENST00000353578 DAZ2Q13117 558 aaKnown RBP10.02□□□□□ -0.81
COL6A3-203ENST00000353578 DAZ4Q86SG3 579 aaKnown RBP10.02□□□□□ -0.81
COL6A3-203ENST00000353578 DAZ3Q9NR90 486 aaKnown RBP10.02□□□□□ -0.81
COL6A3-203ENST00000353578 Q8TCH9 128 aa10.02□□□□□ -0.81
COL6A3-203ENST00000353578 H3BUA1 57 aa10.02□□□□□ -0.81
COL6A3-203ENST00000353578 PSPNO60542 156 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 TRAV25A0A0B4J276 109 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 NDUFA4O00483 81 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 C2orf70A6NJV1 201 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 FAM168AQ92567 244 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 SND1-IT1Q9HBX3 110 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 SLC25A45Q8N413 288 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 M0QXV9 152 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 TRBV12-3P01733 135 aa10.01□□□□□ -0.81
COL6A3-203ENST00000353578 MIAQ16674 131 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 TMEM200BQ69YZ2 307 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 SPTSSBQ8NFR3 76 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms