RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 ABCA2Q9BZC7 2435 aa13.78□□□□□ -0.2
PTP4A3-202ENST00000349124 F6UB75 175 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 IGHV3-11P01762 117 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 KLK9Q2XQG4 91 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 GPHB5Q86YW7 130 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 GLMPQ8WWB7 406 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 COL25A1Q9BXS0 654 aaPredicted RBP13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 NPFFR1Q9GZQ6 430 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 KLK9Q9UKQ9 250 aa13.77□□□□□ -0.2
PTP4A3-202ENST00000349124 TRAV41A0A0B4J266 112 aa13.77□□□□□ -0.21
PTP4A3-202ENST00000349124 M0R381 172 aa13.77□□□□□ -0.21
PTP4A3-202ENST00000349124 DEFB104AQ8WTQ1 72 aa13.77□□□□□ -0.21
PTP4A3-202ENST00000349124 TRBV25-1A0A075B6N4 114 aa13.76□□□□□ -0.21
PTP4A3-202ENST00000349124 LY6EQ16553 131 aa13.76□□□□□ -0.21
PTP4A3-202ENST00000349124 LAGE3Q14657 143 aa13.76□□□□□ -0.21
PTP4A3-202ENST00000349124 CSMD2Q7Z408 3487 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 DPM2O94777 84 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 ARL3P36405 182 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 SMIM15Q7Z3B0 74 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 CSPG4Q6UVK1 2322 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 RPL11P62913 178 aaKnown RBP13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 CHAC1Q9BUX1 264 aa13.75□□□□□ -0.21
PTP4A3-202ENST00000349124 Q6ZS46 218 aa13.74□□□□□ -0.21
PTP4A3-202ENST00000349124 MYOZ3Q8TDC0 251 aa13.74□□□□□ -0.21
PTP4A3-202ENST00000349124 K7EP34 96 aa13.74□□□□□ -0.21
PTP4A3-202ENST00000349124 A0A1W2PPM0 123 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 SRD5A1P18405 259 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 ZFAND2AQ8N6M9 145 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 C14orf178Q8N769 122 aaPredicted RBP13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 ITLN2Q8WWU7 325 aaPredicted RBP13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 RPL39LQ96EH5 51 aaKnown RBP13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 GTF2H5Q6ZYL4 71 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 MEGF9Q9H1U4 602 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 SPCS1Q9Y6A9 102 aa13.73□□□□□ -0.21
PTP4A3-202ENST00000349124 GNRH2O43555 120 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 WFDC12Q8WWY7 111 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 ATP5LO75964 103 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 IGHV4-39P01824 125 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 EDN2P20800 178 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 UCNP55089 124 aa13.72□□□□□ -0.21
PTP4A3-202ENST00000349124 C19orf54Q5BKX5 351 aa13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 MRPL53Q96EL3 112 aaKnown RBP13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 MOB4Q9Y3A3 225 aa13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 SMIM13P0DJ93 91 aa13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 IGHV4-38-2P0DP08 117 aa13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 RNASE4P34096 147 aaKnown RBP13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 SRSF1Q07955 248 aaKnown RBP eCLIP13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 NHP2Q9NX24 153 aaKnown RBP13.71□□□□□ -0.21
PTP4A3-202ENST00000349124 AGRNO00468 2067 aa13.71□□□□□ -0.22
PTP4A3-202ENST00000349124 IGHV4-4A0A075B6R2 117 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 BLCAPP62952 87 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 ANXA2RQ3ZCQ2 193 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 SAMD5Q5TGI4 173 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 RASL10AQ92737 203 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 S100A4P26447 101 aaKnown RBP13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 RIPPLY3P57055 190 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 HIF1ANQ9NWT6 349 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 IGHV4-61A0A0C4DH41 118 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 NEGR1Q7Z3B1 354 aa13.7□□□□□ -0.22
PTP4A3-202ENST00000349124 A0A087WX48 190 aa13.69□□□□□ -0.22
PTP4A3-202ENST00000349124 SMIM2Q9BVW6 85 aa13.69□□□□□ -0.22
PTP4A3-202ENST00000349124 IGHV1-69DA0A0B4J2H0 117 aa13.69□□□□□ -0.22
PTP4A3-202ENST00000349124 IGHV1-69P01742 117 aa13.69□□□□□ -0.22
PTP4A3-202ENST00000349124 K7ERU9 68 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 C9orf139Q6ZV77 190 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 SOCS3O14543 225 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 MGPP08493 103 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 OR10J6PQ8NGY7 276 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 PHLDA1Q8WV24 401 aaPredicted RBP13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 HIGD1BQ9P298 99 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 SMPXQ9UHP9 88 aa13.68□□□□□ -0.22
PTP4A3-202ENST00000349124 UTP20O75691 2785 aaKnown RBP13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 FAM223BA6NKX1 122 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 PF4V1P10720 104 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 FABP2P12104 132 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 FAM223AQ8IWN6 122 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 CEND1Q8N111 149 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 PHLDA3Q9Y5J5 127 aa13.67□□□□□ -0.22
PTP4A3-202ENST00000349124 GNLYP22749 145 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 SUMO2P61956 95 aaKnown RBP13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 LINC00477Q96M19 166 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 SCGB3A1Q96QR1 104 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 FLNCQ14315 2725 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 CFAP46Q8IYW2 2715 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 SORL1Q92673 2214 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 H3BUX3 64 aa13.66□□□□□ -0.22
PTP4A3-202ENST00000349124 DOPEY2Q9Y3R5 2298 aa13.65□□□□□ -0.22
PTP4A3-202ENST00000349124 JPT2Q9H910 190 aa13.65□□□□□ -0.22
PTP4A3-202ENST00000349124 TRAV21A0A0B4J279 112 aa13.65□□□□□ -0.22
PTP4A3-202ENST00000349124 RNF223E7ERA6 249 aa13.65□□□□□ -0.22
PTP4A3-202ENST00000349124 CREBBPQ92793 2442 aa13.65□□□□□ -0.22
PTP4A3-202ENST00000349124 MRAP2Q96G30 205 aa13.64□□□□□ -0.23
PTP4A3-202ENST00000349124 NDUFA4O00483 81 aa13.64□□□□□ -0.23
PTP4A3-202ENST00000349124 RNASE3P12724 160 aaKnown RBP13.64□□□□□ -0.23
PTP4A3-202ENST00000349124 ASIPP42127 132 aa13.64□□□□□ -0.23
PTP4A3-202ENST00000349124 RHPN1-AS1Q9BWJ2 59 aa13.64□□□□□ -0.23
PTP4A3-202ENST00000349124 TM2D2Q9BX73 214 aa13.63□□□□□ -0.23
PTP4A3-202ENST00000349124 USP9YO00507 2555 aaPredicted RBP13.63□□□□□ -0.23
PTP4A3-202ENST00000349124 MUC4Q99102 2169 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms