RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C7orf71A4D174 169 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 HSD52Q0P140 79 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 SAMD13Q5VXD3 122 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 Q6ZVH6 145 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 COX8CQ7Z4L0 72 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 ORMDL3Q8N138 153 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 C17orf77Q96MU5 243 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 AAMDCQ9H7C9 122 aa9.84□□□□□ -0.83
CLK3-201ENST00000345005 IGHV3OR16-8A0A075B7F1 116 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 CLPSL1A2RUU4 121 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 BUB3O43684 328 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 PSMB8P28062 276 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 TMEM95Q3KNT9 176 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 IL17RELQ6ZVW7 336 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 EXOC3-AS1Q8N2X6 119 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 ZNF702PQ9H963 129 aa9.83□□□□□ -0.84
CLK3-201ENST00000345005 TMEM189A5PLL7 270 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 C9orf118A6NHY6 69 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 NDUFA4O00483 81 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 IGHV3-11P01762 117 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 CSN3P07498 182 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 ARMS2P0C7Q2 107 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 SRSF2Q01130 221 aaKnown RBP9.82□□□□□ -0.84
CLK3-201ENST00000345005 KRTAP1-1Q07627 177 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 FAM104BQ5XKR9 115 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 SIGLEC15Q6ZMC9 328 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 BOD1L2Q8IYS8 172 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 ZC2HC1AQ96GY0 325 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 YAE1D1Q9NRH1 226 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 A0A087X0K7 114 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 PRELID3AQ96N28 172 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 U3KQE9 123 aa9.82□□□□□ -0.84
CLK3-201ENST00000345005 ZNF785A8K8V0 405 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 K7EP34 96 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 TRBV12-3P01733 135 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 HBDP02042 147 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 FOXE3Q13461 319 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 LCNL1Q6ZST4 164 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 C2orf91Q6ZV80 131 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 Q8N2B8 174 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 SMAD5-AS1Q9Y6J3 95 aa9.81□□□□□ -0.84
CLK3-201ENST00000345005 TRAV8-1A0A0A6YYK1 113 aa9.8□□□□□ -0.84
CLK3-201ENST00000345005 ELANEP08246 267 aa9.8□□□□□ -0.84
CLK3-201ENST00000345005 ZNF138P52744 262 aa9.8□□□□□ -0.84
CLK3-201ENST00000345005 SCGB2A2Q13296 93 aa9.8□□□□□ -0.84
CLK3-201ENST00000345005 TRAV8-6A0A0B4J262 113 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 H0Y8G0 127 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 SIGMAR1Q99720 223 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 SONP18583 2426 aaKnown RBP9.79□□□□□ -0.84
CLK3-201ENST00000345005 J3QR89 54 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 ZNF207O43670 478 aaKnown RBP9.79□□□□□ -0.84
CLK3-201ENST00000345005 FGF6P10767 208 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 IFI27P40305 119 aaPredicted RBP9.79□□□□□ -0.84
CLK3-201ENST00000345005 DUX5Q96PT3 197 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 SIGLEC8Q9NYZ4 499 aa9.79□□□□□ -0.84
CLK3-201ENST00000345005 ZNF469Q96JG9 3925 aaPredicted RBP9.79□□□□□ -0.84
CLK3-201ENST00000345005 ACANP16112 2415 aa9.78□□□□□ -0.84
CLK3-201ENST00000345005 FAM106AQ4KMX7 169 aa9.78□□□□□ -0.84
CLK3-201ENST00000345005 OR8A1Q8NGG7 326 aa9.78□□□□□ -0.84
CLK3-201ENST00000345005 IFI27L1Q96BM0 104 aa9.78□□□□□ -0.84
CLK3-201ENST00000345005 LINC01546A6NGU7 62 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 C10orf99Q6UWK7 81 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 UNQ9165/PRO28630Q6UXU0 137 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 RNF152Q8N8N0 203 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 SLC50A1Q9BRV3 221 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 TMEM160Q9NX00 188 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 HIGD1BQ9P298 99 aa9.77□□□□□ -0.84
CLK3-201ENST00000345005 IGHV3-66A0A0C4DH42 116 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 D6R8Y8 96 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 LYZL1Q6UWQ5 148 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 GPHB5Q86YW7 130 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 OR2K2Q8NGT1 345 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 MYOZ3Q8TDC0 251 aa9.77□□□□□ -0.85
CLK3-201ENST00000345005 TIMM8BQ9Y5J9 83 aaPredicted RBP9.77□□□□□ -0.85
CLK3-201ENST00000345005 TEP1Q99973 2627 aaKnown RBP9.77□□□□□ -0.85
CLK3-201ENST00000345005 HIVEP1P15822 2718 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 IGHV3OR16-13A0A075B7E8 117 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 IGHV3-49A0A0A0MS15 119 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 IGHV3-74A0A0B4J1X5 117 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 DNAJC9-AS1A6NH13 148 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 K7EMT4 169 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 M0R3E3 92 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 CKS2P33552 79 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 CRIP1P50238 77 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 RIPPLY3P57055 190 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 TCTEX1D4Q5JR98 221 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 GLMPQ8WWB7 406 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 UBE2E2Q96LR5 201 aa9.76□□□□□ -0.85
CLK3-201ENST00000345005 NXT2Q9NPJ8 142 aaKnown RBP9.76□□□□□ -0.85
CLK3-201ENST00000345005 SAP30O75446 220 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 HLA-DRB4P13762 266 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 MRPL51Q4U2R6 128 aaKnown RBP9.75□□□□□ -0.85
CLK3-201ENST00000345005 TPPP3Q9BW30 176 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 MAP1LC3AQ9H492 121 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 HLA-DRB4X5D2U9 266 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 A0A096LNJ9 63 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 SH2D1AO60880 128 aa9.75□□□□□ -0.85
CLK3-201ENST00000345005 LGALS1P09382 135 aaKnown RBP9.75□□□□□ -0.85
CLK3-201ENST00000345005 FABP2P12104 132 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms