RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SMAD7O15105 426 aaKnown RBP9.31□□□□□ -0.92
USP1-201ENST00000339950 TRBV12-3P01733 135 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 CD300EQ496F6 205 aaPredicted RBP9.31□□□□□ -0.92
USP1-201ENST00000339950 EEF1AKMT3Q96AZ1 226 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 KAAG1Q9UBP8 84 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 CFHR4Q92496 578 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 ANAPC13Q9BS18 74 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 ZNF747Q9BV97 191 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 C9orf118A6NHY6 69 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 BLCAPP62952 87 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 ADORA2A-AS1P86434 159 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 TNFRSF14Q92956 283 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 IGHV7-81A0A0B4J1V7 117 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 OVOL3O00110 214 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 TNFRSF6BO95407 300 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 RAB9AP51151 201 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 KLF5Q13887 457 aaPredicted RBP9.3□□□□□ -0.92
USP1-201ENST00000339950 AGPAT4-IT1Q9H0P7 198 aa9.3□□□□□ -0.92
USP1-201ENST00000339950 TRAV12-2A0A075B6T6 113 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 COX8AP10176 69 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 MLST8Q9BVC4 326 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 TNRC6BQ9UPQ9 1833 aaKnown RBP9.29□□□□□ -0.92
USP1-201ENST00000339950 IGKV3D-20A0A0C4DH25 116 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 SCGB3A1Q96QR1 104 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 A0A1B0GXF2 115 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 IGKCP01834 107 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 SPINK8P0C7L1 97 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 HOXB4P17483 251 aaPredicted RBP9.29□□□□□ -0.92
USP1-201ENST00000339950 PAX8Q06710 450 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 CHAC1Q9BUX1 264 aa9.29□□□□□ -0.92
USP1-201ENST00000339950 TRAV12-3A0A0B4J271 114 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 C19orf71A6NCJ1 209 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 CRYGCP07315 174 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 TMEM238LA0A1B0GVL6 79 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 A6NJY4 79 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 ZNF492Q9P255 531 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 ZANQ9Y493 2812 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 LYRM7Q5U5X0 104 aa9.28□□□□□ -0.92
USP1-201ENST00000339950 TRAV41A0A0B4J266 112 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 A0A1W2PPR1 153 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 GAGE12HA6NDE8 117 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 HAX1O00165 279 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 GNRH2O43555 120 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 DPM2O94777 84 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 CD7P09564 240 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 DTX2Q86UW9 622 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 OR9G4Q8NGQ1 327 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 KLF12Q9Y4X4 402 aa9.27□□□□□ -0.92
USP1-201ENST00000339950 WFDC2Q14508 124 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 ZNF56Q15929 161 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 DUX3Q96PT4 197 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 PGPEP1Q9NXJ5 209 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 A0A0U1RRA0 63 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 A0A1W2PPM0 123 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 TMEM8BA6NDV4 472 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.27□□□□□ -0.93
USP1-201ENST00000339950 NPFFO15130 113 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 HERVK_113P61574 105 aa9.27□□□□□ -0.93
USP1-201ENST00000339950 GEMIN7Q9H840 131 aaKnown RBP9.27□□□□□ -0.93
USP1-201ENST00000339950 KNCNA6PVL3 124 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 K7EP34 96 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 SNCGO76070 127 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 IGLV2-11P01706 119 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 C8orf86Q6ZUL3 223 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 MRPL35Q9NZE8 188 aaKnown RBP9.26□□□□□ -0.93
USP1-201ENST00000339950 ZNF815PA8K554 130 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 HOXA3O43365 443 aaPredicted RBP9.26□□□□□ -0.93
USP1-201ENST00000339950 IGHV4-39P01824 125 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 PRSS22Q9GZN4 317 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 A0A1W2PRX2 142 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 SYT8Q8NBV8 401 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 RAX2Q96IS3 184 aa9.26□□□□□ -0.93
USP1-201ENST00000339950 IGLV11-55A0A075B6I3 123 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 H3BRM9 83 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 UNQ9165/PRO28630Q6UXU0 137 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 CCL19Q99731 98 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 LINC00574Q9H8X3 128 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 IGHV4-38-2P0DP08 117 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 MYCNOSP40205 109 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 NPC2P61916 151 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 MRGPRG-AS1Q2M3A8 158 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 CT83Q5H943 113 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 PSMG4Q5JS54 123 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 RPL39LQ96EH5 51 aaKnown RBP9.25□□□□□ -0.93
USP1-201ENST00000339950 GFRA4Q9GZZ7 299 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 C19orf84I3L1E1 186 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 TEX29Q8N6K0 151 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 JPT2Q9H910 190 aa9.25□□□□□ -0.93
USP1-201ENST00000339950 FAM159AQ6UWV7 190 aa9.24□□□□□ -0.93
USP1-201ENST00000339950 PIP4P2Q8N4L2 257 aa9.24□□□□□ -0.93
USP1-201ENST00000339950 Q8N9W7 124 aa9.24□□□□□ -0.93
USP1-201ENST00000339950 KLK9Q9UKQ9 250 aa9.24□□□□□ -0.93
USP1-201ENST00000339950 UTP20O75691 2785 aaKnown RBP9.24□□□□□ -0.93
USP1-201ENST00000339950 FXYD2P54710 66 aa9.23□□□□□ -0.93
USP1-201ENST00000339950 PRB1P04280 392 aa9.23□□□□□ -0.93
USP1-201ENST00000339950 RPS20P60866 119 aaKnown RBP9.23□□□□□ -0.93
USP1-201ENST00000339950 RHPN1-AS1Q9BWJ2 59 aa9.23□□□□□ -0.93
USP1-201ENST00000339950 IGKV3OR2-268A0A0C4DH90 116 aa9.23□□□□□ -0.93
USP1-201ENST00000339950 RNASE13Q5GAN3 156 aaKnown RBP9.23□□□□□ -0.93
USP1-201ENST00000339950 TMEM14CQ9P0S9 112 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms