RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TMEM158Q8WZ71 300 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 MRPL36Q9P0J6 103 aaKnown RBP5.32□□□□□ -1.56
SF3B1-201ENST00000335508 H3BRM9 83 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 SNAI2O43623 268 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 DDTP30046 118 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 Q1RN00 199 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 FAM104BQ5XKR9 115 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 MRAP2Q96G30 205 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 TRAV2A0A0B4J234 112 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 TRAV12-3A0A0B4J271 114 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 A6NDN8 102 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 LGALS9O00182 355 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 EDN2P20800 178 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 TTC32Q5I0X7 151 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 NUP35Q8NFH5 326 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 OR9G4Q8NGQ1 327 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 PSMG3-AS1Q96PY0 264 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 CHTOPQ9Y3Y2 248 aaKnown RBP5.32□□□□□ -1.56
SF3B1-201ENST00000335508 K7EMI3 77 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 UBE2L6O14933 153 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 Q0VG73 95 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 IFI27L1Q96BM0 104 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 NAA38Q9BRA0 125 aaKnown RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 MS4A6AQ9H2W1 248 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 TRGV1A0A0A0MS02 117 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 C2orf70A6NJV1 201 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 E7EUB6 86 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 ADCYAP1P18509 176 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 ZNF256Q9Y2P7 627 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 NUP210LQ5VU65 1888 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 EML5Q05BV3 1969 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 A0A0U1RQV1 116 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 CRIP2P52943 208 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 TEX48A0A1B0GUV7 120 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 MORN3Q6PF18 240 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 DYNAPQ8N1N2 210 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 WIPF2Q8TF74 440 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 XCL2Q9UBD3 114 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 LOC389332A0A1B0GUA5 103 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 SUMO2P61956 95 aaKnown RBP5.31□□□□□ -1.56
SF3B1-201ENST00000335508 A0A087X0K7 114 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 SPINK13Q1W4C9 94 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 PMCHL2Q9BQD1 86 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 SLC25A2Q9BXI2 301 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 PAM16Q9Y3D7 125 aa5.31□□□□□ -1.56
SF3B1-201ENST00000335508 DNAJC9-AS1A6NH13 148 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 IGLC2P0DOY2 106 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 PPIFP30405 207 aaKnown RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 COA6Q5JTJ3 125 aaKnown RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 RNASE8Q8TDE3 154 aaKnown RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 DMRT1Q9Y5R6 373 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 IGKV1D-37A0A075B6S9 117 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 PRSS2P07478 247 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 COL5A1-AS1Q5SY13 56 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 Q6ZSV7 163 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 C2orf88Q9BSF0 95 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 MUC4Q99102 2169 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 LTAP01374 205 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 COX6CP09669 75 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 JOSD1Q15040 202 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 RNASE1P07998 156 aaKnown RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 DEFB121Q5J5C9 76 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 CHCHD5Q9BSY4 110 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 V9GYV3 84 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 ITPR1Q14643 2758 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 M0QXV9 152 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 SHISA2Q6UWI4 295 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 C14orf178Q8N769 122 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 OR2K2Q8NGT1 345 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 SSBP4Q9BWG4 385 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-201ENST00000335508 LAMA3Q16787 3333 aa5.3□□□□□ -1.56
SF3B1-201ENST00000335508 KIAA1549Q9HCM3 1950 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 S100A7L2Q5SY68 101 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 UTF1Q5T230 341 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 IGF2BP2-AS1Q96M15 143 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 MUC21A0A0G2JKD1 596 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 MUC21A0A140T8X8 626 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 TRPT1Q86TN4 253 aaKnown RBP5.29□□□□□ -1.56
SF3B1-201ENST00000335508 C20orf78Q9BR46 151 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 NPSP0C0P6 89 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 PCNTO95613 3336 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 K7EQG2 157 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 HINT1P49773 126 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-201ENST00000335508 TMEM170BQ5T4T1 132 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 ODF3Q96PU9 254 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 TMEM160Q9NX00 188 aa5.29□□□□□ -1.56
SF3B1-201ENST00000335508 MED14OSP0DP75 135 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 DNLZQ5SXM8 178 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 IGFL4Q6B9Z1 124 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 C9orf47Q6ZRZ4 202 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 RITA1Q96K30 269 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 CCDC140Q96MF4 163 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 A0A0J9YX75 114 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 HTN3P15516 51 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 CRYBA4P53673 196 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 BCL6BQ8N143 479 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-201ENST00000335508 OR13C6PQ8NH95 151 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 D6R8Y8 96 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 HIST1H2BLQ99880 126 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 K7EN84 100 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 280.2 ms