RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 A0A1B0GW15 77 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 M0R2Z0 102 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 IGKV3-20P01619 116 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 GZMBP10144 247 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 WDR73Q6P4I2 378 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 GTSCR1Q86UQ5 136 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 GATD1Q8NB37 220 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 KCNS1Q96KK3 526 aa10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 SSBP4Q9BWG4 385 aaPredicted RBP10.96□□□□□ -0.65
CCDC88C-202ENST00000334448 NOTCH3Q9UM47 2321 aa10.96□□□□□ -0.66
CCDC88C-202ENST00000334448 F2Z2F3 143 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 PHOX2AO14813 284 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 SNAI2O43623 268 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 MT-ND6P03923 174 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 OR5AL1P0C617 328 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 NUTF2P61970 127 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 Q6ZQT7 251 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 FER1L6-AS1Q8NA97 138 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 GNB1LQ9BYB4 327 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 CMYA5Q8N3K9 4069 aa10.95□□□□□ -0.66
CCDC88C-202ENST00000334448 TRAV12-3A0A0B4J271 114 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 A0A1B0GUT8 65 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 J3KRW8 73 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 RPS10P46783 165 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 EGFEM1PQ0D2K5 195 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 ANXA2RQ3ZCQ2 193 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 MORN3Q6PF18 240 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 PGLYRP4Q96LB8 373 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 SCRT2Q9NQ03 307 aa10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 ZMAT5Q9UDW3 170 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-202ENST00000334448 IGHV4-4A0A075B6R2 117 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 TRAV12-2A0A075B6T6 113 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 TMSB15BA0A087X1C1 80 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 INSP01308 110 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 S100A8P05109 93 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 HBBP68871 147 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 RIGQ13278 110 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 FAM159AQ6UWV7 190 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 Q8N1Y9 231 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 TP53TG3Q9ULZ0 132 aa10.93□□□□□ -0.66
CCDC88C-202ENST00000334448 IGHV1OR15-1A0A075B7D0 117 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 HLA-DQA1P01909 254 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 ARMS2P0C7Q2 107 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 RBMY1A1P0DJD3 496 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 RBMY1CP0DJD4 496 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 ASIPP42127 132 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 RBMY1FQ15415 496 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 MRPL54Q6P161 138 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 LYZL1Q6UWQ5 148 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 TMEM136Q6ZRR5 245 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 TMEM256Q8N2U0 113 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 BORCS7Q96B45 105 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 WFDC10AQ9H1F0 79 aa10.92□□□□□ -0.66
CCDC88C-202ENST00000334448 GRIFINA4D1Z8 144 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 NXPH4O95158 308 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 GIG44P09565 113 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 LURAP1LQ8IV03 231 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 C1QTNF4Q9BXJ3 329 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 NAGKQ9UJ70 344 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 DNAH3Q8TD57 4116 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 AGRNO00468 2067 aa10.91□□□□□ -0.66
CCDC88C-202ENST00000334448 TRGV11A0A075B6L2 103 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 C1orf196B1AJZ1 125 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 FRMD6-AS1P0C7T7 363 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 CACNG7P62955 275 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 MUC21Q5SSG8 566 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 ZNF493Q6ZR52 646 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 DEFB125Q8N687 156 aa10.9□□□□□ -0.66
CCDC88C-202ENST00000334448 IGHV3-16A0A0C4DH30 117 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 SNURFLB1AK76 121 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 SPINK4O60575 86 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 TRGC2P03986 189 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 RNASE3P12724 160 aaKnown RBP10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 C9orf85Q96MD7 179 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 MDFIQ99750 246 aa10.89□□□□□ -0.67
CCDC88C-202ENST00000334448 KIR2DL5BA0A0G2JN68 375 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 KIR2DL5BA0A0G2JPC4 375 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 FXYD7P58549 80 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 RAB5BP61020 215 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 DMRTA1Q5VZB9 504 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 KIR2DL5AQ8N109 375 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 C1orf158Q8N1D5 194 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 CSNK1G2-AS1Q8NCQ2 148 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 KIR2DL5BQ8NHK3 375 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 TPPP3Q9BW30 176 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 TRAPPC1Q9Y5R8 145 aa10.88□□□□□ -0.67
CCDC88C-202ENST00000334448 H3BVH4 76 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 GNRH2O43555 120 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 S100A4P26447 101 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 RIPPLY3P57055 190 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 OXLD1Q5BKU9 147 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 SAMD5Q5TGI4 173 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 OR10AG1Q8NH19 301 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 PTH2Q96A98 100 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 MRPL18Q9H0U6 180 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 XCL2Q9UBD3 114 aa10.87□□□□□ -0.67
CCDC88C-202ENST00000334448 A8MZ25 164 aa10.86□□□□□ -0.67
CCDC88C-202ENST00000334448 CAMPP49913 170 aa10.86□□□□□ -0.67
CCDC88C-202ENST00000334448 PIK3CD-AS1Q5SR53 167 aa10.86□□□□□ -0.67
CCDC88C-202ENST00000334448 TMEM191AQ9H0A3 160 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms