RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TDRG1Q3Y452 100 aa11.27□□□□□ -0.6
CCDC28A-201ENST00000332797 ZC2HC1AQ96GY0 325 aa11.27□□□□□ -0.6
CCDC28A-201ENST00000332797 SDF2L1Q9HCN8 221 aa11.27□□□□□ -0.6
CCDC28A-201ENST00000332797 C11orf21Q9P2W6 132 aa11.27□□□□□ -0.6
CCDC28A-201ENST00000332797 GNRH2O43555 120 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 TYMSP04818 313 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 Q6ZTI0 123 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 NHLRC2Q8NBF2 726 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 C11orf52Q96A22 123 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 KCNS1Q96KK3 526 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 MDFICQ9P1T7 246 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 VAX2Q9UIW0 290 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 LYSTQ99698 3801 aa11.26□□□□□ -0.61
CCDC28A-201ENST00000332797 TRGV1A0A0A0MS02 117 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 PDE6DO43924 150 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 TAGLN2P37802 199 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 RPL35P42766 123 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 RAB14P61106 215 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 LINC00612Q8N6U2 182 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 LYPD6BQ8NI32 183 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 DERL1Q9BUN8 251 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 KMT2CQ8NEZ4 4911 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 FABP5P3A8MUU1 101 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 SPINK4O60575 86 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 ATP5G1P05496 136 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 BAGE2Q86Y30 109 aa11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 MRPL16Q9NX20 251 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-201ENST00000332797 IGHV4-4A0A075B6R2 117 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 IGHV3-16A0A0C4DH30 117 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 SH2D1AO60880 128 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 FAM162BQ5T6X4 162 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 COX8CQ7Z4L0 72 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 MED9Q9NWA0 146 aa11.24□□□□□ -0.61
CCDC28A-201ENST00000332797 TRGV2A0A075B6R0 118 aa11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 RBFOX3A6NFN3 312 aa11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 F5H768 121 aa11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 CRIP1P50238 77 aa11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 CLLU1Q5K131 121 aa11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 PCNPQ8WW12 178 aaKnown RBP11.23□□□□□ -0.61
CCDC28A-201ENST00000332797 ORM1P02763 201 aa11.22□□□□□ -0.61
CCDC28A-201ENST00000332797 SPXQ9BT56 116 aa11.22□□□□□ -0.61
CCDC28A-201ENST00000332797 ALMS1Q8TCU4 4167 aa11.22□□□□□ -0.61
CCDC28A-201ENST00000332797 IGKV3D-20A0A0C4DH25 116 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 B4DEV8 164 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 M0R036 132 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 TCTAP57738 103 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 ZNF674Q2M3X9 581 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 LGALS9BQ3B8N2 356 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 CENPWQ5EE01 88 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 TOR2AQ5JU69 321 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 ZNF506Q5JVG8 444 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 NDUFAF3Q9BU61 184 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 APLNQ9ULZ1 77 aa11.21□□□□□ -0.61
CCDC28A-201ENST00000332797 LCE6AA0A183 80 aa11.2□□□□□ -0.62
CCDC28A-201ENST00000332797 RAB19A4D1S5 217 aa11.2□□□□□ -0.62
CCDC28A-201ENST00000332797 PRR27Q6MZM9 219 aa11.2□□□□□ -0.62
CCDC28A-201ENST00000332797 TMEM88Q6PEY1 159 aa11.2□□□□□ -0.62
CCDC28A-201ENST00000332797 MLST8Q9BVC4 326 aa11.2□□□□□ -0.62
CCDC28A-201ENST00000332797 GNG4P50150 75 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 FAM210BQ96KR6 192 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 EIF5A2Q9GZV4 153 aaKnown RBP11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 TMSB15BA0A087X1C1 80 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 KRBOX1C9JBD0 128 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 M0R2P5 195 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 MGST1P10620 155 aaKnown RBP11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 S100A4P26447 101 aaKnown RBP11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 ASIPP42127 132 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 OR5I1Q13606 314 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 C18orf15Q96N68 181 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 FAM210AQ96ND0 272 aa11.19□□□□□ -0.62
CCDC28A-201ENST00000332797 IGHV3-53P01767 116 aa11.18□□□□□ -0.62
CCDC28A-201ENST00000332797 HOXA5P20719 270 aa11.18□□□□□ -0.62
CCDC28A-201ENST00000332797 LINC01559Q495D7 138 aa11.18□□□□□ -0.62
CCDC28A-201ENST00000332797 LINC00476Q8WZB0 136 aa11.18□□□□□ -0.62
CCDC28A-201ENST00000332797 C9orf85Q96MD7 179 aa11.18□□□□□ -0.62
CCDC28A-201ENST00000332797 TRBV20OR9-2A0A075B6H5 130 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 GRIFINA4D1Z8 144 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 TMEM250H0YL14 139 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 LY6G6CO95867 125 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 IGLV2-8P01709 118 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 RNASE3P12724 160 aaKnown RBP11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 CEBPGP53567 150 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 RASL10AQ92737 203 aa11.17□□□□□ -0.62
CCDC28A-201ENST00000332797 PGPEP1LA6NFU8 196 aa11.16□□□□□ -0.62
CCDC28A-201ENST00000332797 C9JCJ5 164 aa11.16□□□□□ -0.62
CCDC28A-201ENST00000332797 H3BVH4 76 aa11.16□□□□□ -0.62
CCDC28A-201ENST00000332797 NDUFA5Q16718 116 aa11.16□□□□□ -0.62
CCDC28A-201ENST00000332797 SMIM12Q96EX1 92 aa11.16□□□□□ -0.62
CCDC28A-201ENST00000332797 DNAH1Q9P2D7 4330 aa11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 SACSQ9NZJ4 4579 aa11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 TRAV26-1A0A087WT03 109 aa11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 RPL19P84098 196 aaKnown RBP11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 ZNF876PQ49A33 203 aa11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 PARLQ9H300 379 aa11.15□□□□□ -0.62
CCDC28A-201ENST00000332797 A0A0J9YY99 117 aa11.14□□□□□ -0.63
CCDC28A-201ENST00000332797 SFTA3P0C7M3 94 aa11.14□□□□□ -0.63
CCDC28A-201ENST00000332797 C15orf53Q8NAA6 179 aa11.14□□□□□ -0.63
CCDC28A-201ENST00000332797 TRAV4A0A0B4J268 109 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 LINC00862A6NCI5 91 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 NUDT3O95989 172 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms