RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF833PQ6ZTB9 187 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 PSMB8P28062 276 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 ZFP36L1Q07352 338 aaKnown RBP11.46□□□□□ -0.58
COL7A1-201ENST00000328333 A0A087WV48 116 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 C8orf86Q6ZUL3 223 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 PIP4P2Q8N4L2 257 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 FAM110DQ8TAY7 271 aaPredicted RBP11.46□□□□□ -0.58
COL7A1-201ENST00000328333 TRAV12-1A0A0B4J245 112 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 C5orf47Q569G3 176 aa11.46□□□□□ -0.58
COL7A1-201ENST00000328333 ZFHX2Q9C0A1 2572 aaPredicted RBP11.45□□□□□ -0.58
COL7A1-201ENST00000328333 ZFP2Q6ZN57 461 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 LINC01620Q4KN68 170 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 TMEM213A2RRL7 107 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 C9JQL5 133 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 NDUFA4O00483 81 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 NDUFB1O75438 58 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 APOC4P55056 127 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 PFN2P35080 140 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 H3BRN7 92 aa11.45□□□□□ -0.58
COL7A1-201ENST00000328333 ZNF747Q9BV97 191 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 LRP4O75096 1905 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-201ENST00000328333 NTN5Q8WTR8 489 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-201ENST00000328333 OPRPNQ99935 248 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-201ENST00000328333 NDPQ00604 133 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 C10orf55Q5SWW7 151 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 WFDC9Q8NEX5 89 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 GAFA1Q96PS6 74 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 A0A1B0GUS0 222 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 K7EM74 188 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 Q8TCH9 128 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-201ENST00000328333 ZC2HC1AQ96GY0 325 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 C8orf49Q96NF6 230 aa11.44□□□□□ -0.58
COL7A1-201ENST00000328333 G3V4G9 280 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 LINC00479Q96M42 142 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 C11orf44Q8N8P7 122 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 FOXL2NBQ6ZUU3 175 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 C8orf31Q8N9H6 132 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 CSRP2Q16527 193 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 AMTNQ6UX39 209 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 V9GYY9 64 aa11.43□□□□□ -0.58
COL7A1-201ENST00000328333 KLHL30-AS1Q8NEE0 82 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 IGKV1D-17A0A075B6S4 117 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 MUSTN1Q8IVN3 82 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 ZNF672Q499Z4 452 aaPredicted RBP11.42□□□□□ -0.58
COL7A1-201ENST00000328333 LINC00311Q8N616 119 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 FLVCR1-AS1Q8TAF5 88 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 FOXI1Q12951 378 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 NAV2Q8IVL1 2488 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 SPRR3Q9UBC9 169 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 PRSS29PA6NIE9 313 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 VWC2Q2TAL6 325 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 FXYD5Q96DB9 178 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 MSRB2Q9Y3D2 182 aa11.42□□□□□ -0.58
COL7A1-201ENST00000328333 NDUFC1O43677 76 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 CD24P25063 80 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 H3BUA1 57 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 IGLL5B9A064 214 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 IGLC1P0CG04 106 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 TMEM256-PLSCR3K7ERE1 68 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 Q6ZRM9 215 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 UQCRQO14949 82 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 DKK1O94907 266 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 UBE2BP63146 152 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 SVIPQ8NHG7 77 aa11.41□□□□□ -0.58
COL7A1-201ENST00000328333 CXCL5P42830 114 aa11.4□□□□□ -0.58
COL7A1-201ENST00000328333 NDUFV3P56181 108 aaKnown RBP11.4□□□□□ -0.58
COL7A1-201ENST00000328333 NDUFS5O43920 106 aa11.4□□□□□ -0.58
COL7A1-201ENST00000328333 UBE2E1P51965 193 aa11.4□□□□□ -0.58
COL7A1-201ENST00000328333 DAD1P61803 113 aa11.4□□□□□ -0.58
COL7A1-201ENST00000328333 DAZ2Q13117 558 aaKnown RBP11.4□□□□□ -0.58
COL7A1-201ENST00000328333 DAZ4Q86SG3 579 aaKnown RBP11.4□□□□□ -0.58
COL7A1-201ENST00000328333 DAZ3Q9NR90 486 aaKnown RBP11.4□□□□□ -0.58
COL7A1-201ENST00000328333 C5orf63A6NC05 138 aa11.4□□□□□ -0.59
COL7A1-201ENST00000328333 TINCRA0A1B0GVN0 87 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 SEC61GP60059 68 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 MCRIP2Q9BUT9 160 aaKnown RBP11.39□□□□□ -0.59
COL7A1-201ENST00000328333 H3BUX3 64 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 LINC00527Q9UJ94 153 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 TMEM219Q86XT9 240 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 SAA4P35542 130 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 Q9H8V8 135 aa11.39□□□□□ -0.59
COL7A1-201ENST00000328333 DEFB130BP0DP73 79 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 DEFB130AP0DP74 79 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 PROP1O75360 226 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 PIFOQ8TCI5 191 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 CRYGCP07315 174 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 LINC01356Q8N9X3 169 aa11.38□□□□□ -0.59
COL7A1-201ENST00000328333 NCOR2Q9Y618 2525 aa11.37□□□□□ -0.59
COL7A1-201ENST00000328333 MRPL23Q16540 153 aaKnown RBP11.37□□□□□ -0.59
COL7A1-201ENST00000328333 BRK1Q8WUW1 75 aa11.37□□□□□ -0.59
COL7A1-201ENST00000328333 LINC00643Q86TS7 51 aa11.37□□□□□ -0.59
COL7A1-201ENST00000328333 NREPQ16612 68 aa11.37□□□□□ -0.59
COL7A1-201ENST00000328333 DKK2Q9UBU2 259 aa11.37□□□□□ -0.59
COL7A1-201ENST00000328333 USP9XQ93008 2570 aaPredicted RBP11.36□□□□□ -0.59
COL7A1-201ENST00000328333 EFNA2O43921 213 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 OVOL3O00110 214 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 LGALS9O00182 355 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 DYNAPQ8N1N2 210 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms