RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 IGKV2D-26A0A0A0MRZ7 120 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 IGLC6P0CF74 106 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 FGF6P10767 208 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 MINOS1Q5TGZ0 78 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 ZNF502Q8TBZ5 544 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 DPF1Q92782 380 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 SCGB3A1Q96QR1 104 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 MINOS1-NBL1R4GNA1 71 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 F8W735 103 aaPredicted RBP8.13□□□□□ -1.11
COL3A1-202ENST00000317840 SFTA2Q6UW10 78 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 OR5A1Q8NGJ0 315 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 PRORYQ9H606 182 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 SRSF1Q07955 248 aaKnown RBP eCLIP8.12□□□□□ -1.11
COL3A1-202ENST00000317840 SRSF9Q13242 221 aaKnown RBP eCLIP8.12□□□□□ -1.11
COL3A1-202ENST00000317840 ODF1Q14990 250 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 C8orf86Q6ZUL3 223 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 OR10J6PQ8NGY7 276 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 RELNP78509 3460 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 J3QR89 54 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 MTURNQ8N3F0 131 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 Q8N9W7 124 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 U3KQK5 164 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 C2CD3Q4AC94 2353 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 SPENQ96T58 3664 aaKnown RBP8.12□□□□□ -1.11
COL3A1-202ENST00000317840 TRBV25-1A0A075B6N4 114 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 OOSP1A8MZH6 123 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 H3BUX3 64 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 LCNL1Q6ZST4 164 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 C14orf178Q8N769 122 aaPredicted RBP8.12□□□□□ -1.11
COL3A1-202ENST00000317840 Q8N8P6 123 aa8.12□□□□□ -1.11
COL3A1-202ENST00000317840 FAM110DQ8TAY7 271 aaPredicted RBP8.12□□□□□ -1.11
COL3A1-202ENST00000317840 IGHV4-61A0A0C4DH41 118 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 SIVA1O15304 175 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 IGHV4-39P01824 125 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 HIVEP2P31629 2446 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 IGKV3D-20A0A0C4DH25 116 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 LINC01548A6NM66 108 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 NPFFO15130 113 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 FBXL19-AS1Q494R0 122 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 RNF185Q96GF1 192 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 ZNF479Q96JC4 524 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 ANKRD17O75179 2603 aaKnown RBP8.11□□□□□ -1.11
COL3A1-202ENST00000317840 PAX8Q06710 450 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 GATD1Q8NB37 220 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 WFDC12Q8WWY7 111 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 SMPXQ9UHP9 88 aa8.11□□□□□ -1.11
COL3A1-202ENST00000317840 ODF3BA8MYP8 253 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 RNF223E7ERA6 249 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 DEFB1P60022 68 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 AGRNO00468 2067 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 SRD5A1P18405 259 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 RNASE4P34096 147 aaKnown RBP8.1□□□□□ -1.11
COL3A1-202ENST00000317840 ADAMTSL5Q6ZMM2 481 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 PIP4P2Q8N4L2 257 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 ARL6IP6Q8N6S5 226 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 C11orf44Q8N8P7 122 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 ZNF48Q96MX3 618 aaPredicted RBP8.1□□□□□ -1.11
COL3A1-202ENST00000317840 CYSLTR1Q9Y271 337 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 LINC01559Q495D7 138 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 PSMG4Q5JS54 123 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 Q6ZQT7 251 aa8.1□□□□□ -1.11
COL3A1-202ENST00000317840 FN1P02751 2386 aaKnown RBP8.1□□□□□ -1.11
COL3A1-202ENST00000317840 IGHV4-30-2A0A087WSY4 118 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 LOC107984156A0A0G2JMH3 177 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 ASIPP42127 132 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 AMTNQ6UX39 209 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 ARL17AQ8IVW1 177 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 CSTL1Q9H114 145 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 C11orf21Q9P2W6 132 aa8.09□□□□□ -1.11
COL3A1-202ENST00000317840 HTN1P15515 57 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 EMP1P54849 157 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 CHTOPQ9Y3Y2 248 aaKnown RBP8.08□□□□□ -1.12
COL3A1-202ENST00000317840 TRAV41A0A0B4J266 112 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 OVOL3O00110 214 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 IGHG4P01861 327 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 FAM74A4Q5TZK3 123 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 HIST2H2BCQ6DN03 193 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 IGKV3-20P01619 116 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 UBE2E1P51965 193 aa8.08□□□□□ -1.12
COL3A1-202ENST00000317840 NEGR1Q7Z3B1 354 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 CCDC140Q96MF4 163 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 FLNBO75369 2602 aaKnown RBP8.07□□□□□ -1.12
COL3A1-202ENST00000317840 TRBV7-1A0A0A6YYK4 115 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 TRAV21A0A0B4J279 112 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 TEX48A0A1B0GUV7 120 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 F6UB75 175 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 H3BMG7 143 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 CD300EQ496F6 205 aaPredicted RBP8.07□□□□□ -1.12
COL3A1-202ENST00000317840 CEND1Q8N111 149 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 NPFFR1Q9GZQ6 430 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 GTSF1LQ9H1H1 148 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 ASH1LQ9NR48 2969 aaKnown RBP8.07□□□□□ -1.12
COL3A1-202ENST00000317840 FLNCQ14315 2725 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 IGF1P05019 195 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 PLNP26678 52 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 SUMO2P61956 95 aaKnown RBP8.07□□□□□ -1.12
COL3A1-202ENST00000317840 ETDBQ3ZM63 59 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 ORMDL2Q53FV1 153 aa8.07□□□□□ -1.12
COL3A1-202ENST00000317840 SMIM2Q9BVW6 85 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms