RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 FAM231DQ6ZW35 169 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 SMIM12Q96EX1 92 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 PRM2P04554 102 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 MLST8Q9BVC4 326 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 IGHV3OR16-12A0A075B7B8 117 aa13.28□□□□□ -0.28
HMGA1-201ENST00000311487 LTAP01374 205 aa13.28□□□□□ -0.28
HMGA1-201ENST00000311487 C8orf49Q96NF6 230 aa13.28□□□□□ -0.28
HMGA1-201ENST00000311487 IFITM10A6NMD0 228 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 ZNF138P52744 262 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 LBHQ53QV2 105 aaPredicted RBP13.27□□□□□ -0.28
HMGA1-201ENST00000311487 PRR9Q5T870 116 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 ZNF492Q9P255 531 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 PSG8Q9UQ74 426 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 CBY1Q9Y3M2 126 aa13.27□□□□□ -0.28
HMGA1-201ENST00000311487 ZNF705GA8MUZ8 300 aaPredicted RBP13.27□□□□□ -0.29
HMGA1-201ENST00000311487 A8MZ25 164 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 RNASE4P34096 147 aaKnown RBP13.27□□□□□ -0.29
HMGA1-201ENST00000311487 GFI1BQ5VTD9 330 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 NUDT10Q8NFP7 164 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 NUDT11Q96G61 164 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 LINC00477Q96M19 166 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 TRAPPC1Q9Y5R8 145 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 COL7A1Q02388 2944 aa13.27□□□□□ -0.29
HMGA1-201ENST00000311487 TENM3Q9P273 2699 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 SMIM27A0A1W2PRY6 76 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 RBAKDNA6NC62 111 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 K7EQM0 130 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 NUTF2P61970 127 aaKnown RBP13.26□□□□□ -0.29
HMGA1-201ENST00000311487 PRR27Q6MZM9 219 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 Q86TA4 180 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 HIST3H2BBQ8N257 126 aa13.26□□□□□ -0.29
HMGA1-201ENST00000311487 CRXO43186 299 aaPredicted RBP13.25□□□□□ -0.29
HMGA1-201ENST00000311487 RBMY1A1P0DJD3 496 aaKnown RBP13.25□□□□□ -0.29
HMGA1-201ENST00000311487 RBMY1CP0DJD4 496 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 HTN1P15515 57 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 APOC4P55056 127 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 RBMY1FQ15415 496 aaKnown RBP13.25□□□□□ -0.29
HMGA1-201ENST00000311487 TRAV12-3A0A0B4J271 114 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 TRBV6-1A0A0K0K1D8 114 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 CDKN1BP46527 198 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 TCL1AP56279 114 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 TMEM75Q8N9X5 138 aa13.25□□□□□ -0.29
HMGA1-201ENST00000311487 GPX1P07203 203 aa13.24□□□□□ -0.29
HMGA1-201ENST00000311487 A0A1B0GV90 55 aa13.23□□□□□ -0.29
HMGA1-201ENST00000311487 A8MTW9 85 aa13.23□□□□□ -0.29
HMGA1-201ENST00000311487 ZFAND2AQ8N6M9 145 aa13.23□□□□□ -0.29
HMGA1-201ENST00000311487 FAM19A4Q96LR4 140 aa13.23□□□□□ -0.29
HMGA1-201ENST00000311487 PDZD11Q5EBL8 140 aa13.23□□□□□ -0.29
HMGA1-201ENST00000311487 COA6Q5JTJ3 125 aaKnown RBP13.23□□□□□ -0.29
HMGA1-201ENST00000311487 XKRY2A2RUG3 117 aa13.22□□□□□ -0.29
HMGA1-201ENST00000311487 DNLZQ5SXM8 178 aa13.22□□□□□ -0.29
HMGA1-201ENST00000311487 MORN3Q6PF18 240 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-201ENST00000311487 TMEM183AQ8IXX5 376 aa13.22□□□□□ -0.29
HMGA1-201ENST00000311487 CSNK1G2-AS1Q8NCQ2 148 aa13.22□□□□□ -0.29
HMGA1-201ENST00000311487 KIR2DL5BA0A0G2JN68 375 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 KIR2DL5BA0A0G2JPC4 375 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 C19orf71A6NCJ1 209 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 SPINK4O60575 86 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 ZNF80P51504 273 aaPredicted RBP13.21□□□□□ -0.29
HMGA1-201ENST00000311487 KIR2DL5AQ8N109 375 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 KIR2DL5BQ8NHK3 375 aa13.21□□□□□ -0.29
HMGA1-201ENST00000311487 SERTM2A0A1B0GWG4 89 aa13.21□□□□□ -0.3
HMGA1-201ENST00000311487 RAB4AP20338 218 aa13.21□□□□□ -0.3
HMGA1-201ENST00000311487 LEPP41159 167 aa13.21□□□□□ -0.3
HMGA1-201ENST00000311487 C1orf158Q8N1D5 194 aa13.21□□□□□ -0.3
HMGA1-201ENST00000311487 CLUHP3Q96NS8 147 aa13.21□□□□□ -0.3
HMGA1-201ENST00000311487 MRPL18Q9H0U6 180 aaKnown RBP13.21□□□□□ -0.3
HMGA1-201ENST00000311487 TGP01266 2768 aa13.2□□□□□ -0.3
HMGA1-201ENST00000311487 DEFB4AO15263 64 aa13.2□□□□□ -0.3
HMGA1-201ENST00000311487 RCHY1Q96PM5 261 aa13.2□□□□□ -0.3
HMGA1-201ENST00000311487 TMEM208Q9BTX3 173 aa13.2□□□□□ -0.3
HMGA1-201ENST00000311487 GNB1LQ9BYB4 327 aa13.2□□□□□ -0.3
HMGA1-201ENST00000311487 SNURFLB1AK76 121 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 KLLNB2CW77 178 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 TSPOP30536 169 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 RPL19P84098 196 aaKnown RBP13.19□□□□□ -0.3
HMGA1-201ENST00000311487 TSKUQ8WUA8 353 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 ZC2HC1AQ96GY0 325 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 C14orf144Q96I85 54 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 NEU1Q99519 415 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 B9D2Q9BPU9 175 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 C2orf88Q9BSF0 95 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 RPP21Q9H633 154 aaKnown RBP13.19□□□□□ -0.3
HMGA1-201ENST00000311487 INSP01308 110 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 MUC21Q5SSG8 566 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 MRPL54Q6P161 138 aaKnown RBP13.19□□□□□ -0.3
HMGA1-201ENST00000311487 TMEM136Q6ZRR5 245 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 LINC01587Q99440 93 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 OVOL2Q9BRP0 275 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 NDFIP1Q9BT67 221 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 NAGKQ9UJ70 344 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 ZFP30Q9Y2G7 519 aa13.19□□□□□ -0.3
HMGA1-201ENST00000311487 C7orf71A4D174 169 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 CRISP2P16562 243 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 S100A2P29034 98 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 CT83Q5H943 113 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 WDR73Q6P4I2 378 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 NUP35Q8NFH5 326 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 NAT8BQ9UHF3 227 aa13.18□□□□□ -0.3
HMGA1-201ENST00000311487 SPRY2O43597 315 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms