RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 FOXE3Q13461 319 aa8.88□□□□□ -0.99
PCDHGC3-201ENST00000308177 ARHGAP32A7KAX9 2087 aa8.88□□□□□ -0.99
PCDHGC3-201ENST00000308177 TRAV26-2A0A0B4J265 109 aa8.88□□□□□ -0.99
PCDHGC3-201ENST00000308177 LGALS1P09382 135 aaKnown RBP8.88□□□□□ -0.99
PCDHGC3-201ENST00000308177 STPG4Q8N801 248 aa8.88□□□□□ -0.99
PCDHGC3-201ENST00000308177 USP9YO00507 2555 aaPredicted RBP8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 ATG2AQ2TAZ0 1938 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 KNCNA6PVL3 124 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 CFHR4Q92496 578 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 TLN2Q9Y4G6 2542 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 ZNF48Q96MX3 618 aaPredicted RBP8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 CHCHD5Q9BSY4 110 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 USP9XQ93008 2570 aaPredicted RBP8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 TRPT1Q86TN4 253 aaKnown RBP8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 ATP6V0BQ99437 205 aa8.87□□□□□ -0.99
PCDHGC3-201ENST00000308177 IGHV3-64A0A075B6Q5 118 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 IGHG2P01859 326 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 IGLC2P0DOY2 106 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 C11orf71Q6IPW1 123 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 C2orf66Q6UXQ4 117 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 C5orf42Q9H799 3197 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 C16orf54Q6UWD8 224 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 BCL6BQ8N143 479 aaPredicted RBP8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 SVIPQ8NHG7 77 aa8.86□□□□□ -0.99
PCDHGC3-201ENST00000308177 KLF5Q13887 457 aaPredicted RBP8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 TEX43Q6ZNM6 134 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 PRADC1Q9BSG0 188 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 ADARB2-AS1A8MUL3 147 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 RHODO00212 210 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 CRYGBP07316 175 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 IGLC3P0DOY3 106 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 DEFB136Q30KP8 78 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 SDHAF1A6NFY7 115 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 LY6LH3BQJ8 138 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 EREGO14944 169 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 NUPR1O60356 82 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 GTSF1Q8WW33 167 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 SMIM2Q9BVW6 85 aa8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 MRPS16Q9Y3D3 137 aaKnown RBP8.85□□□□□ -0.99
PCDHGC3-201ENST00000308177 PRAC2D3DTV9 90 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 PHLDA1Q8WV24 401 aaPredicted RBP8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 TRAV2A0A0B4J234 112 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 PRSS47A8MTI9 375 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 TP53TG1Q9Y2A0 90 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 CHD9Q3L8U1 2897 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 GNRH2O43555 120 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 IGLL1P15814 213 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 RIPPLY3P57055 190 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 SFTA2Q6UW10 78 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 OR13C6PQ8NH95 151 aa8.84□□□□□ -0.99
PCDHGC3-201ENST00000308177 CDPF1Q6NVV7 123 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 TANC2Q9HCD6 1990 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 LINC01548A6NM66 108 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 FOXI2Q6ZQN5 318 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 A8MWV9 139 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 FRMD6-AS1P0C7T7 363 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 CDSNQ15517 529 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 C2CD3Q4AC94 2353 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 BPTFQ12830 3046 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 A6NDX4 124 aa8.83□□□□□ -1
PCDHGC3-201ENST00000308177 Q71RC1 249 aaPredicted RBP8.83□□□□□ -1
PCDHGC3-201ENST00000308177 MKI67P46013 3256 aaKnown RBP8.83□□□□□ -1
PCDHGC3-201ENST00000308177 LGALS9BQ3B8N2 356 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 LGALS9CQ6DKI2 356 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 A0A1B0GWB2 263 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 PLEKHB2Q96CS7 222 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 SNHG12Q9BXW3 62 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 EBI3Q14213 229 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 OR5A1Q8NGJ0 315 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 C1orf159Q96HA4 380 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 MSRB1Q9NZV6 116 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 ZNF479Q96JC4 524 aa8.82□□□□□ -1
PCDHGC3-201ENST00000308177 SLURP1P55000 103 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 NEGR1Q7Z3B1 354 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 SORL1Q92673 2214 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 TNFRSF13BO14836 293 aaPredicted RBP8.81□□□□□ -1
PCDHGC3-201ENST00000308177 SPRY2O43597 315 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 DEFB130BP0DP73 79 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 DEFB130AP0DP74 79 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 C20orf78Q9BR46 151 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 NAA38Q9BRA0 125 aaKnown RBP8.81□□□□□ -1
PCDHGC3-201ENST00000308177 ZNF747Q9BV97 191 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 IGHV3-16A0A0C4DH30 117 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 TRBV6-1A0A0K0K1D8 114 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 A0A0U1RRA0 63 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 IGLV2-8P01709 118 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 C21orf62-AS1Q17RA5 79 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 UNQ9165/PRO28630Q6UXU0 137 aa8.81□□□□□ -1
PCDHGC3-201ENST00000308177 K7EMT4 169 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 CCDC140Q96MF4 163 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 C19orf71A6NCJ1 209 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 I3L3M4 83 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 TRBV12-3P01733 135 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 MEGF9Q9H1U4 602 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 TMEM238C9JI98 176 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 DLEU1O43261 78 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 GATA1P15976 413 aaPredicted RBP8.8□□□□□ -1
PCDHGC3-201ENST00000308177 SAMD5Q5TGI4 173 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 CFAP161Q6P656 301 aa8.8□□□□□ -1
PCDHGC3-201ENST00000308177 GPHB5Q86YW7 130 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms