RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LTBRP36941 435 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 EFNA2O43921 213 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 PSPNO60542 156 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 EIF4EBP2Q13542 120 aaPredicted RBP9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 ATG2AQ2TAZ0 1938 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 TEX49A0A1B0GTD5 131 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 A4D1N5 150 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 Q9H8V8 135 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 PATE3B3GLJ2 98 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 METRNQ9UJH8 293 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 FAM120AOSQ5T036 256 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 TTTY13Q9BZ97 58 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 CLPSL2Q6UWE3 100 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 ZFP2Q6ZN57 461 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 PLXNA4Q9HCM2 1894 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 LOXL1Q08397 574 aaPredicted RBP9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 SPATA12Q7Z6I5 190 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 TLN2Q9Y4G6 2542 aa9.42□□□□□ -0.9
SHROOM3-201ENST00000296043 Q6P435 159 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 TMEM61Q8N0U2 210 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 PDE6HQ13956 83 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 LYNX1G3V0Z9 82 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 LYNX1P0DP58 116 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 CRYGSP22914 178 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 UPK3BQ9BT76 320 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 GLI3P10071 1580 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 PAX9P55771 341 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 C9orf139Q6ZV77 190 aa9.41□□□□□ -0.9
SHROOM3-201ENST00000296043 IGLC6P0CF74 106 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 LGALS9O00182 355 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 ANKHD1Q8IWZ3 2542 aaKnown RBP9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 IGKV1-16P04430 117 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 KIAA1671Q9BY89 1806 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 F5H768 121 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 FNDC1Q4ZHG4 1894 aaPredicted RBP9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 UQCRQO14949 82 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 KLHL30-AS1Q8NEE0 82 aa9.4□□□□□ -0.9
SHROOM3-201ENST00000296043 TCL1BO95988 128 aa9.4□□□□□ -0.91
SHROOM3-201ENST00000296043 ATP5G1P05496 136 aa9.4□□□□□ -0.91
SHROOM3-201ENST00000296043 SLC25A29Q8N8R3 303 aa9.4□□□□□ -0.91
SHROOM3-201ENST00000296043 GATA1P15976 413 aaPredicted RBP9.4□□□□□ -0.91
SHROOM3-201ENST00000296043 HRCT1Q6UXD1 115 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 IGHV1-3A0A0C4DH29 117 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 CD177Q8N6Q3 437 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 C20orf197Q8N268 126 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 TRBV7-1A0A0A6YYK4 115 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 TMEM14BQ9NUH8 114 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 DYNAPQ8N1N2 210 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 NOTCH4Q99466 2003 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 TRAV4A0A0B4J268 109 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 C1orf210Q8IVY1 113 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 RETNQ9HD89 108 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 HIGD1BQ9P298 99 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 C17orf100A8MU93 164 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 WISP1O95388 367 aa9.39□□□□□ -0.91
SHROOM3-201ENST00000296043 ACACBO00763 2458 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 IGKV1-6A0A0C4DH72 117 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 DEFB130BP0DP73 79 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 DEFB130AP0DP74 79 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 FAM27E3Q08E93 113 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 TMEM200BQ69YZ2 307 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 TRBV10-2A0A0K0K1G8 114 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 CFHR1Q03591 330 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 RBAKDNA6NC62 111 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 E9PQ18 207 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 C1orf162Q8NEQ5 155 aaPredicted RBP9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 FXYD5Q96DB9 178 aa9.38□□□□□ -0.91
SHROOM3-201ENST00000296043 SLC25A45Q8N413 288 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 ZNRD1Q9P1U0 126 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 LINC00694P0DN24 101 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 PRR30Q53SZ7 412 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 C11orf44Q8N8P7 122 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 COL11A2P13942 1736 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 SETD2Q9BYW2 2564 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 RPL39LQ96EH5 51 aaKnown RBP9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 SPINK13Q1W4C9 94 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 VSIG2Q96IQ7 327 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 TRBV6-6A0A0A6YYG2 114 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 WDR86Q86TI4 376 aa9.37□□□□□ -0.91
SHROOM3-201ENST00000296043 Q8N1Y9 231 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 ZNF561-AS1K7EIQ3 104 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 C7orf69Q9H7B7 122 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 PROP1O75360 226 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 C11orf52Q96A22 123 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 TNS1Q9HBL0 1735 aaKnown RBP9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 NSUN5P1Q3KNT7 163 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 PRDM6Q9NQX0 595 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 UBE2DNLQ8IWF7 75 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 IGKV2-29A2NJV5 120 aaPredicted RBP9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 BUB3O43684 328 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 CXCL5P42830 114 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 TEX36Q5VZQ5 186 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 C9orf106Q8NAJ2 232 aa9.36□□□□□ -0.91
SHROOM3-201ENST00000296043 PYGO2Q9BRQ0 406 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 COL18A1P39060 1754 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 CENPVL3A0A0U1RRI6 287 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 IGHV1-8P0DP01 117 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 ARTNQ5T4W7 220 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 IGHV1-46P01743 117 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms