RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 UFC1Q9Y3C8 167 aa12.79□□□□□ -0.36
CPSF4-201ENST00000292476 HSBP1L1C9JCN9 74 aa12.78□□□□□ -0.36
CPSF4-201ENST00000292476 DLEU1O43261 78 aa12.78□□□□□ -0.36
CPSF4-201ENST00000292476 ZNF25P17030 456 aaPredicted RBP12.78□□□□□ -0.36
CPSF4-201ENST00000292476 LINC01545Q5VT33 79 aa12.78□□□□□ -0.36
CPSF4-201ENST00000292476 FER1L6-AS1Q8NA97 138 aa12.78□□□□□ -0.36
CPSF4-201ENST00000292476 PRSS3P2Q8NHM4 247 aa12.78□□□□□ -0.36
CPSF4-201ENST00000292476 DAZ1Q9NQZ3 744 aaKnown RBP12.78□□□□□ -0.36
CPSF4-201ENST00000292476 BATFQ16520 125 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 MAJINQ3KP22 176 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 TMEM158Q8WZ71 300 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 ASCL2Q99929 193 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 VGLL1Q99990 258 aa12.77□□□□□ -0.36
CPSF4-201ENST00000292476 IGHV3OR16-8A0A075B7F1 116 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 FABP5P3A8MUU1 101 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 LINC01559Q495D7 138 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 PRR31Q5SQ13 230 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 C10orf99Q6UWK7 81 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 LINC00173Q6ZV60 143 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 PRELID3AQ96N28 172 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 TMEM208Q9BTX3 173 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 TPPP3Q9BW30 176 aa12.77□□□□□ -0.37
CPSF4-201ENST00000292476 COL6A5A8TX70 2615 aa12.76□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF747Q9BV97 191 aa12.76□□□□□ -0.37
CPSF4-201ENST00000292476 PPP1R14DQ9NXH3 145 aa12.76□□□□□ -0.37
CPSF4-201ENST00000292476 TMEM213A2RRL7 107 aa12.75□□□□□ -0.37
CPSF4-201ENST00000292476 D6R8Y8 96 aa12.75□□□□□ -0.37
CPSF4-201ENST00000292476 PPBPP02775 128 aa12.75□□□□□ -0.37
CPSF4-201ENST00000292476 CSN3P07498 182 aa12.75□□□□□ -0.37
CPSF4-201ENST00000292476 LGALS9O00182 355 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 NDUFA7O95182 113 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF80P51504 273 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF138P52744 262 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 HIST1H1AQ02539 215 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-201ENST00000292476 MRPL51Q4U2R6 128 aaKnown RBP12.74□□□□□ -0.37
CPSF4-201ENST00000292476 UNQ9165/PRO28630Q6UXU0 137 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 Q8TAT8 98 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 C4orf3Q8WVX3 66 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 DPF1Q92782 380 aa12.74□□□□□ -0.37
CPSF4-201ENST00000292476 IGHV7-4-1A0A0J9YVY3 117 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF207O43670 478 aaKnown RBP12.73□□□□□ -0.37
CPSF4-201ENST00000292476 G0S2P27469 103 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 SAMD13Q5VXD3 122 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 AMN1Q8IY45 258 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.73□□□□□ -0.37
CPSF4-201ENST00000292476 STPG4Q8N801 248 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 SIGLEC8Q9NYZ4 499 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 TMSB15BA0A087X1C1 80 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF124Q15973 351 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 SLC25A34Q6PIV7 304 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 GLMPQ8WWB7 406 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 PMCHL2Q9BQD1 86 aa12.73□□□□□ -0.37
CPSF4-201ENST00000292476 LINC01546A6NGU7 62 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 HLA-DMBP28068 263 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 IFI27P40305 119 aaPredicted RBP12.72□□□□□ -0.37
CPSF4-201ENST00000292476 ORAOV1Q8WV07 137 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 SCRT2Q9NQ03 307 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 SMPXQ9UHP9 88 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 GOLT1BQ9Y3E0 138 aa12.72□□□□□ -0.37
CPSF4-201ENST00000292476 TWIST1Q15672 202 aa12.71□□□□□ -0.37
CPSF4-201ENST00000292476 ZNF575Q86XF7 245 aa12.71□□□□□ -0.37
CPSF4-201ENST00000292476 LINC01006Q8NI28 216 aa12.71□□□□□ -0.37
CPSF4-201ENST00000292476 RHPN1-AS1Q9BWJ2 59 aa12.71□□□□□ -0.37
CPSF4-201ENST00000292476 LENEPQ9Y5L5 61 aa12.71□□□□□ -0.37
CPSF4-201ENST00000292476 IGHV3-66A0A0C4DH42 116 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 LINC01619G3V211 115 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 ORM1P02763 201 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 CKS2P33552 79 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 C9orf47Q6ZRZ4 202 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 IGHV4OR15-8A0A075B7B6 117 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 A0A087WW49 117 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 A0A096LNJ9 63 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 IGHV3-49A0A0A0MS15 119 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 hDV102S1A0JD36 115 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 HBDP02042 147 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 LGALS9BQ3B8N2 356 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 KHDC1LQ5JSQ8 128 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 TMEM78Q5T7P6 136 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 IGFL4Q6B9Z1 124 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 LGALS9CQ6DKI2 356 aa12.7□□□□□ -0.38
CPSF4-201ENST00000292476 IGHV3OR16-13A0A075B7E8 117 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 IGHV3-74A0A0B4J1X5 117 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 TRAV8-2A0A0B4J237 113 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 PRAC2D3DTV9 90 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 HOXD3P31249 432 aaPredicted RBP12.69□□□□□ -0.38
CPSF4-201ENST00000292476 ERCC8Q13216 396 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 TM4SF20Q53R12 229 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 C8orf86Q6ZUL3 223 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 DNHD1Q96M86 4753 aa12.69□□□□□ -0.38
CPSF4-201ENST00000292476 PRB4P10163 310 aaPredicted RBP12.68□□□□□ -0.38
CPSF4-201ENST00000292476 TFPI2P48307 235 aa12.68□□□□□ -0.38
CPSF4-201ENST00000292476 HINT1P49773 126 aaPredicted RBP12.68□□□□□ -0.38
CPSF4-201ENST00000292476 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
CPSF4-201ENST00000292476 AGPAT4-IT1Q9H0P7 198 aa12.68□□□□□ -0.38
CPSF4-201ENST00000292476 MAP1LC3AQ9H492 121 aa12.68□□□□□ -0.38
CPSF4-201ENST00000292476 PEMTQ9UBM1 199 aa12.68□□□□□ -0.38
CPSF4-201ENST00000292476 TCTEX1D4Q5JR98 221 aa12.67□□□□□ -0.38
CPSF4-201ENST00000292476 PSMG4Q5JS54 123 aa12.67□□□□□ -0.38
CPSF4-201ENST00000292476 C12orf54Q6X4T0 127 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms