RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 A0A087WW49 117 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 TMEM213A2RRL7 107 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 HSBP1L1C9JCN9 74 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 ID1P41134 155 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 HIST1H1AQ02539 215 aaPredicted RBP11.59□□□□□ -0.55
SF3B4-201ENST00000271628 ORAOV1Q8WV07 137 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 ORM1P02763 201 aa11.58□□□□□ -0.56
SF3B4-201ENST00000271628 LINC00173Q6ZV60 143 aa11.58□□□□□ -0.56
SF3B4-201ENST00000271628 TMSB15BA0A087X1C1 80 aa11.58□□□□□ -0.56
SF3B4-201ENST00000271628 HOXD3P31249 432 aaPredicted RBP11.58□□□□□ -0.56
SF3B4-201ENST00000271628 HINT1P49773 126 aaPredicted RBP11.58□□□□□ -0.56
SF3B4-201ENST00000271628 Q6ZSV7 163 aa11.58□□□□□ -0.56
SF3B4-201ENST00000271628 TPPP3Q9BW30 176 aa11.58□□□□□ -0.56
SF3B4-201ENST00000271628 IGKV3-7A0A075B6H7 116 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 SYNJ2BPP57105 145 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 LINC01559Q495D7 138 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 LYZL1Q6UWQ5 148 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 PRSS3P2Q8NHM4 247 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 MS4A6AQ9H2W1 248 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 TMEM160Q9NX00 188 aa11.57□□□□□ -0.56
SF3B4-201ENST00000271628 CSN3P07498 182 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 FA2HQ7L5A8 372 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 DCANP1Q8TF63 244 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 TLN2Q9Y4G6 2542 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 TRBV7-9A0A0J9YWB2 115 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 FER1L6-AS1Q8NA97 138 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 OR10AG1Q8NH19 301 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 WFDC12Q8WWY7 111 aa11.56□□□□□ -0.56
SF3B4-201ENST00000271628 EDN2P20800 178 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 LINC01545Q5VT33 79 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 SLC25A34Q6PIV7 304 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 OR8A1Q8NGG7 326 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 C4orf3Q8WVX3 66 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 U3KQK5 164 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 hDV102S1A0JD36 115 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 LINC01619G3V211 115 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 IGLC6P0CF74 106 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 FAM104BQ5XKR9 115 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 ZNF747Q9BV97 191 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 ESM1Q9NQ30 184 aa11.55□□□□□ -0.56
SF3B4-201ENST00000271628 SRD5A1P18405 259 aa11.54□□□□□ -0.56
SF3B4-201ENST00000271628 DPF1Q92782 380 aa11.54□□□□□ -0.56
SF3B4-201ENST00000271628 COX11Q9Y6N1 276 aa11.54□□□□□ -0.56
SF3B4-201ENST00000271628 ZNF575Q86XF7 245 aa11.53□□□□□ -0.56
SF3B4-201ENST00000271628 ORMDL3Q8N138 153 aa11.53□□□□□ -0.56
SF3B4-201ENST00000271628 OR11H1Q8NG94 326 aa11.53□□□□□ -0.56
SF3B4-201ENST00000271628 SCRT2Q9NQ03 307 aa11.53□□□□□ -0.56
SF3B4-201ENST00000271628 RNASE1P07998 156 aaKnown RBP11.53□□□□□ -0.56
SF3B4-201ENST00000271628 SNRPD3P62318 126 aaKnown RBP11.53□□□□□ -0.56
SF3B4-201ENST00000271628 ZNF418Q8TF45 676 aaPredicted RBP11.53□□□□□ -0.56
SF3B4-201ENST00000271628 PEMTQ9UBM1 199 aa11.53□□□□□ -0.56
SF3B4-201ENST00000271628 TCTEX1D4Q5JR98 221 aa11.52□□□□□ -0.57
SF3B4-201ENST00000271628 WFDC3Q8IUB2 231 aa11.52□□□□□ -0.57
SF3B4-201ENST00000271628 FAM19A4Q96LR4 140 aa11.52□□□□□ -0.57
SF3B4-201ENST00000271628 CNFNQ9BYD5 112 aa11.52□□□□□ -0.57
SF3B4-201ENST00000271628 TRAV21A0A0B4J279 112 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 IGKV3D-20A0A0C4DH25 116 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 D6R8Y8 96 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 IFI27P40305 119 aaPredicted RBP11.51□□□□□ -0.57
SF3B4-201ENST00000271628 KHDC1LQ5JSQ8 128 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 C12orf54Q6X4T0 127 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 OR1N2Q8NGR9 330 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 PRELID3AQ96N28 172 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 ZFAND2AQ8N6M9 145 aa11.51□□□□□ -0.57
SF3B4-201ENST00000271628 K7EQG2 157 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 SLURP1P55000 103 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 TWIST1Q15672 202 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 C18orf65Q6ZTR6 163 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 APRG1Q8IVJ8 170 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 AMN1Q8IY45 258 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 KLHL30-AS1Q8NEE0 82 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 PMCHL2Q9BQD1 86 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 C16orf95Q9H693 158 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 SIGLEC8Q9NYZ4 499 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 SELENOKQ9Y6D0 94 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 MYO9AB2RTY4 2548 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 SONP18583 2426 aaKnown RBP11.5□□□□□ -0.57
SF3B4-201ENST00000271628 F6UB75 175 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 H0Y8G0 127 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 PTTG1IPP53801 180 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 UBE2V1Q13404 147 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 DEFB136Q30KP8 78 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 MPV17L2Q567V2 206 aa11.5□□□□□ -0.57
SF3B4-201ENST00000271628 TCF21O43680 179 aa11.49□□□□□ -0.57
SF3B4-201ENST00000271628 MRPL51Q4U2R6 128 aaKnown RBP11.49□□□□□ -0.57
SF3B4-201ENST00000271628 C11orf21Q9P2W6 132 aa11.49□□□□□ -0.57
SF3B4-201ENST00000271628 TIMM8BQ9Y5J9 83 aaPredicted RBP11.49□□□□□ -0.57
SF3B4-201ENST00000271628 NUDT3O95989 172 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 HILS1P60008 231 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 OR9G4Q8NGQ1 327 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 ANK3Q12955 4377 aaKnown RBP11.48□□□□□ -0.57
SF3B4-201ENST00000271628 A0A096LNJ9 63 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 ZNF688P0C7X2 276 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 COX8AP10176 69 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 DEFB1P60022 68 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 PRR9Q5T870 116 aa11.48□□□□□ -0.57
SF3B4-201ENST00000271628 MCRIP2Q9BUT9 160 aaKnown RBP11.48□□□□□ -0.57
SF3B4-201ENST00000271628 LOC389332A0A1B0GUA5 103 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 CKS2P33552 79 aa11.47□□□□□ -0.57
SF3B4-201ENST00000271628 LGALS9BQ3B8N2 356 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms