RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 ERCC8Q13216 396 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 ATP1A1-AS1Q5TC04 95 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 FAM159AQ6UWV7 190 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 NEXN-AS1Q8NBZ9 246 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 CFHR4Q92496 578 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 SPTBN1Q01082 2364 aaKnown RBP5.58□□□□□ -1.52
CSDE1-201ENST00000261443 CENPVL3A0A0U1RRI6 287 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 IGHG3P01860 377 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 CFC1BP0CG36 223 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 CFC1P0CG37 223 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 RPL7P18124 248 aaKnown RBP5.58□□□□□ -1.52
CSDE1-201ENST00000261443 ARL3P36405 182 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 IL17RELQ6ZVW7 336 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 PSMG3-AS1Q96PY0 264 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 AKAP13Q12802 2813 aa5.58□□□□□ -1.52
CSDE1-201ENST00000261443 ABCA4P78363 2273 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 BRI3O95415 125 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV1-8P0DP01 117 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 LYPD2Q6UXB3 125 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 C10orf126Q8N4M7 172 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 TOMM6Q96B49 74 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 SMIM2Q9BVW6 85 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 PRO1854Q9UHT4 67 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 COX6B1P14854 86 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 DLX1P56177 255 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 PRB3Q04118 309 aaPredicted RBP5.57□□□□□ -1.52
CSDE1-201ENST00000261443 ORMDL2Q53FV1 153 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 SPANXN1Q5VSR9 72 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 GFRALQ6UXV0 394 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 RAB1BQ9H0U4 201 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 TNFRSF18Q9Y5U5 241 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 IGKV3D-20A0A0C4DH25 116 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV1-3A0A0C4DH29 117 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 A0A0J9YY99 117 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 IGHG4P01861 327 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 CRIP2P52943 208 aaPredicted RBP5.57□□□□□ -1.52
CSDE1-201ENST00000261443 Q6Q795 121 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 DYNAPQ8N1N2 210 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 BAALCQ8WXS3 180 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 RASL10AQ92737 203 aa5.57□□□□□ -1.52
CSDE1-201ENST00000261443 ANKRD11Q6UB99 2663 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-201ENST00000261443 ZNF672Q499Z4 452 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-201ENST00000261443 MEIG1Q5JSS6 88 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 Q6ZQT7 251 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 PIP4P1Q86T03 277 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 TRPT1Q86TN4 253 aaKnown RBP5.56□□□□□ -1.52
CSDE1-201ENST00000261443 C1orf210Q8IVY1 113 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 PRSS33Q8NF86 280 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 NTN5Q8WTR8 489 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-201ENST00000261443 SPANXA1Q9NS26 97 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 HIF1ANQ9NWT6 349 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 SCGB2A1O75556 95 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 MFAP4P55083 255 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 DLX6P56179 175 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 ZNF474Q6S9Z5 364 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-201ENST00000261443 Q8N1Y9 231 aa5.56□□□□□ -1.52
CSDE1-201ENST00000261443 TRAV8-4A0A0B4J246 113 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 M0QXV9 152 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV3-30P01768 117 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV3-30-5P0DP03 117 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 LOXP28300 417 aaPredicted RBP5.55□□□□□ -1.52
CSDE1-201ENST00000261443 HERVK_113P61574 105 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 TMEM155Q4W5P6 130 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 C15orf53Q8NAA6 179 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 CCL17Q92583 94 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 C11orf21Q9P2W6 132 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 SMAD5-AS1Q9Y6J3 95 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 PRAC2D3DTV9 90 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 C2orf66Q6UXQ4 117 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 Q6ZS46 218 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 OR10J6PQ8NGY7 276 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 ATRXP46100 2492 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV7-4-1A0A0J9YVY3 117 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 H7C2G1 150 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 SUMO2P61956 95 aaKnown RBP5.55□□□□□ -1.52
CSDE1-201ENST00000261443 TIMD4Q96H15 378 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 DCHS2Q6V1P9 2916 aa5.55□□□□□ -1.52
CSDE1-201ENST00000261443 TMEM178BH3BS89 294 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV3-23P01764 117 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 ODF3Q96PU9 254 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 SLC50A1Q9BRV3 221 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 IGHV3OR16-8A0A075B7F1 116 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 BUB1B-PAK6H3BSN5 160 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 CD59P13987 128 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 EMP1P54849 157 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 PRR30Q53SZ7 412 aaPredicted RBP5.54□□□□□ -1.52
CSDE1-201ENST00000261443 RNF182Q8N6D2 247 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 SLC25A29Q8N8R3 303 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 CUL9Q8IWT3 2517 aa5.54□□□□□ -1.52
CSDE1-201ENST00000261443 TEX49A0A1B0GTD5 131 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 C11orf86A6NJI1 115 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 C17orf100A8MU93 164 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 IGLV1-47P01700 117 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 C3orf36Q3SXR2 165 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 C1orf122Q6ZSJ8 110 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 ASCL5Q7RTU5 278 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 TRAV2A0A0B4J234 112 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 COX7A1P24310 79 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 FAM57AQ8TBR7 257 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 ZFHX3Q15911 3703 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms