RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR9G4Q8NGQ1 327 aa16.97■□□□□ 0.31
CDX1-201ENST00000231656 SAMD10Q9BYL1 202 aa16.97■□□□□ 0.31
CDX1-201ENST00000231656 IGKV3D-20A0A0C4DH25 116 aa16.97■□□□□ 0.31
CDX1-201ENST00000231656 PRR9Q5T870 116 aa16.96■□□□□ 0.31
CDX1-201ENST00000231656 OR8A1Q8NGG7 326 aa16.96■□□□□ 0.31
CDX1-201ENST00000231656 FAM19A4Q96LR4 140 aa16.96■□□□□ 0.31
CDX1-201ENST00000231656 PEMTQ9UBM1 199 aa16.96■□□□□ 0.31
CDX1-201ENST00000231656 CITED1Q99966 193 aa16.95■□□□□ 0.3
CDX1-201ENST00000231656 ZNF324O75467 553 aaPredicted RBP16.94■□□□□ 0.3
CDX1-201ENST00000231656 ADAMTSL5Q6ZMM2 481 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 ZFAND2AQ8N6M9 145 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 CNFNQ9BYD5 112 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 F6UB75 175 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 ID1P41134 155 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 URB1-AS1Q96HZ7 61 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 MS4A6AQ9H2W1 248 aa16.94■□□□□ 0.3
CDX1-201ENST00000231656 MUC21A0A0G2JKD1 596 aa16.93■□□□□ 0.3
CDX1-201ENST00000231656 MUC21A0A140T8X8 626 aa16.93■□□□□ 0.3
CDX1-201ENST00000231656 AMTP48728 403 aa16.93■□□□□ 0.3
CDX1-201ENST00000231656 MUC21Q5SSG8 566 aa16.93■□□□□ 0.3
CDX1-201ENST00000231656 Q6ZQT7 251 aa16.93■□□□□ 0.3
CDX1-201ENST00000231656 PMCHP20382 165 aa16.92■□□□□ 0.3
CDX1-201ENST00000231656 APRG1Q8IVJ8 170 aa16.92■□□□□ 0.3
CDX1-201ENST00000231656 TRBV7-9A0A0J9YWB2 115 aa16.91■□□□□ 0.3
CDX1-201ENST00000231656 CSN3P07498 182 aa16.91■□□□□ 0.3
CDX1-201ENST00000231656 SSTP61278 116 aa16.91■□□□□ 0.3
CDX1-201ENST00000231656 NIT1Q86X76 327 aa16.91■□□□□ 0.3
CDX1-201ENST00000231656 WFDC3Q8IUB2 231 aa16.91■□□□□ 0.3
CDX1-201ENST00000231656 M0QZ24 198 aa16.9■□□□□ 0.3
CDX1-201ENST00000231656 CD33P20138 364 aa16.9■□□□□ 0.3
CDX1-201ENST00000231656 TWIST1Q15672 202 aa16.9■□□□□ 0.3
CDX1-201ENST00000231656 FAM104BQ5XKR9 115 aa16.9■□□□□ 0.3
CDX1-201ENST00000231656 RNASEKQ6P5S7 137 aaKnown RBP16.9■□□□□ 0.3
CDX1-201ENST00000231656 FAM19A2Q8N3H0 131 aa16.9■□□□□ 0.3
CDX1-201ENST00000231656 K7EQG2 157 aa16.89■□□□□ 0.3
CDX1-201ENST00000231656 NTF3P20783 257 aa16.89■□□□□ 0.3
CDX1-201ENST00000231656 SCGB1D1O95968 90 aa16.89■□□□□ 0.29
CDX1-201ENST00000231656 NAGKQ9UJ70 344 aa16.89■□□□□ 0.29
CDX1-201ENST00000231656 U3KQK5 164 aa16.89■□□□□ 0.29
CDX1-201ENST00000231656 HSBP1O75506 76 aa16.88■□□□□ 0.29
CDX1-201ENST00000231656 AMN1Q8IY45 258 aa16.88■□□□□ 0.29
CDX1-201ENST00000231656 TFPI2P48307 235 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 MSRB1Q9NZV6 116 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 VWFP04275 2813 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 TRAV21A0A0B4J279 112 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 J3KRW8 73 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 PF4P02776 101 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 CHCHD1Q96BP2 118 aaKnown RBP16.87■□□□□ 0.29
CDX1-201ENST00000231656 TMEM191AQ9H0A3 160 aa16.87■□□□□ 0.29
CDX1-201ENST00000231656 ZNF688P0C7X2 276 aa16.86■□□□□ 0.29
CDX1-201ENST00000231656 DMRTA1Q5VZB9 504 aa16.86■□□□□ 0.29
CDX1-201ENST00000231656 COL6A5A8TX70 2615 aa16.85■□□□□ 0.29
CDX1-201ENST00000231656 MRPL51Q4U2R6 128 aaKnown RBP16.85■□□□□ 0.29
CDX1-201ENST00000231656 STAB1Q9NY15 2570 aa16.85■□□□□ 0.29
CDX1-201ENST00000231656 LINC00587B1AMM8 73 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 PSMG4Q5JS54 123 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 SIGLEC8Q9NYZ4 499 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 D6R8Y8 96 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 SNAI2O43623 268 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 OR5AL1P0C617 328 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 LINC00614P0C842 121 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 RNASE4P34096 147 aaKnown RBP16.84■□□□□ 0.29
CDX1-201ENST00000231656 SNRPD3P62318 126 aaKnown RBP16.84■□□□□ 0.29
CDX1-201ENST00000231656 KIR3DS1Q14943 382 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 DYNLRB2Q8TF09 96 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 TMEM158Q8WZ71 300 aa16.84■□□□□ 0.29
CDX1-201ENST00000231656 KLLNB2CW77 178 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 M0R2Z0 102 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 PKIAP61925 76 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 DEFB114Q30KQ6 69 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 LINC00482Q8N8I6 264 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 Q8N976 141 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 ZNF747Q9BV97 191 aa16.83■□□□□ 0.28
CDX1-201ENST00000231656 KRTDAPP60985 99 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 OR10AG1Q8NH19 301 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 RNF185Q96GF1 192 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 IGHV4-4A0A075B6R2 117 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 A0A0J9YX75 114 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 ORMDL3Q8N138 153 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 ODF3Q96PU9 254 aa16.82■□□□□ 0.28
CDX1-201ENST00000231656 SORL1Q92673 2214 aa16.81■□□□□ 0.28
CDX1-201ENST00000231656 TMEM61Q8N0U2 210 aa16.81■□□□□ 0.28
CDX1-201ENST00000231656 ZNF664Q8N3J9 261 aa16.81■□□□□ 0.28
CDX1-201ENST00000231656 PRELID3AQ96N28 172 aa16.81■□□□□ 0.28
CDX1-201ENST00000231656 IGHV1-24A0A0C4DH33 117 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 C3orf79P0CE67 100 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 RAB4AP20338 218 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 ANXA2RQ3ZCQ2 193 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 C3orf56Q8N813 242 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 PRO1933Q9H354 126 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 TRRAPQ9Y4A5 3859 aa16.8■□□□□ 0.28
CDX1-201ENST00000231656 H3BVH4 76 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 CACNG7P62955 275 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 CD300EQ496F6 205 aaPredicted RBP16.79■□□□□ 0.28
CDX1-201ENST00000231656 SAP30O75446 220 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 PMCHL1Q16048 86 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 C12orf54Q6X4T0 127 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 TEX43Q6ZNM6 134 aa16.79■□□□□ 0.28
CDX1-201ENST00000231656 TSTD3H0UI37 97 aa16.77■□□□□ 0.28
CDX1-201ENST00000231656 SMKR1H3BMG3 65 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms