RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GCSHP23434 173 aa11.16□□□□□ -0.62
CLN3-264ENST00000637985 RPL12P30050 165 aaKnown RBP11.16□□□□□ -0.62
CLN3-264ENST00000637985 TMEM78Q5T7P6 136 aa11.16□□□□□ -0.62
CLN3-264ENST00000637985 FAM122CQ6P4D5 195 aa11.16□□□□□ -0.62
CLN3-264ENST00000637985 RXFP4Q8TDU9 374 aa11.16□□□□□ -0.62
CLN3-264ENST00000637985 GNPNAT1Q96EK6 184 aaPredicted RBP11.16□□□□□ -0.62
CLN3-264ENST00000637985 A0A087WTM6 91 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GAGE12BA1L429 117 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GAGE7O76087 117 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GPX1P07203 203 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GAGE12FP0CL80 117 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GAGE12GP0CL81 117 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 GAGE12IP0CL82 117 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 DNAH10OSP0CZ25 163 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 M6PRP20645 277 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 CD300CQ08708 224 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 OR5I1Q13606 314 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 ANXA2RQ3ZCQ2 193 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 EIF4E3Q8N5X7 224 aaKnown RBP11.15□□□□□ -0.62
CLN3-264ENST00000637985 SCGB1C1Q8TD33 95 aa11.15□□□□□ -0.62
CLN3-264ENST00000637985 TRAV26-1A0A087WT03 109 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 IGKV2-40A0A087WW87 121 aaPredicted RBP11.14□□□□□ -0.63
CLN3-264ENST00000637985 TRBV7-9A0A0J9YWB2 115 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 OR7C2O60412 319 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 IGKV2D-40P01614 121 aaPredicted RBP11.14□□□□□ -0.63
CLN3-264ENST00000637985 OR10J4P0C629 311 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 RNASE4P34096 147 aaKnown RBP11.14□□□□□ -0.63
CLN3-264ENST00000637985 BTN1A1Q13410 526 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 FFAR4Q5NUL3 377 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 VGLL1Q99990 258 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 ZNF492Q9P255 531 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 MBD2Q9UBB5 411 aa11.14□□□□□ -0.63
CLN3-264ENST00000637985 RNF213Q63HN8 5207 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 DNAH8Q96JB1 4490 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 RBAKDNA6NC62 111 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 H3BNG1 76 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 CSN1S1P47710 185 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 TAS2R45P59539 299 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 KHDC3LQ587J8 217 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 ZFAND2AQ8N6M9 145 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 C11orf72Q8NBR9 251 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 PHYHIPLQ96FC7 376 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 TMEM70Q9BUB7 260 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 GSN-AS1Q9NRJ2 163 aa11.13□□□□□ -0.63
CLN3-264ENST00000637985 HOXA5P20719 270 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 ZNF138P52744 262 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 RANP62826 216 aaKnown RBP11.12□□□□□ -0.63
CLN3-264ENST00000637985 UBE2L3P68036 154 aaKnown RBP11.12□□□□□ -0.63
CLN3-264ENST00000637985 IBA57Q5T440 356 aaKnown RBP11.12□□□□□ -0.63
CLN3-264ENST00000637985 Q6ZTI0 123 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 DEFB104AQ8WTQ1 72 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 SMIM3Q9BZL3 60 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 TNFRSF18Q9Y5U5 241 aa11.12□□□□□ -0.63
CLN3-264ENST00000637985 FAT3Q8TDW7 4589 aa11.11□□□□□ -0.63
CLN3-264ENST00000637985 A0A0J9YY99 117 aa11.11□□□□□ -0.63
CLN3-264ENST00000637985 RGS13O14921 159 aa11.11□□□□□ -0.63
CLN3-264ENST00000637985 TRGV2A0A075B6R0 118 aa11.1□□□□□ -0.63
CLN3-264ENST00000637985 IGHV1OR15-1A0A075B7D0 117 aa11.1□□□□□ -0.63
CLN3-264ENST00000637985 PLA2G1BP04054 148 aaKnown RBP11.1□□□□□ -0.63
CLN3-264ENST00000637985 TCL1AP56279 114 aa11.1□□□□□ -0.63
CLN3-264ENST00000637985 TMPRSS5Q9H3S3 457 aa11.1□□□□□ -0.63
CLN3-264ENST00000637985 TRGV1A0A0A0MS02 117 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 SPINK4O60575 86 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 ACOT6Q3I5F7 207 aaPredicted RBP11.09□□□□□ -0.63
CLN3-264ENST00000637985 PRR9Q5T870 116 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 WFDC1Q9HC57 220 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 LENEPQ9Y5L5 61 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 ALG5Q9Y673 324 aa11.09□□□□□ -0.63
CLN3-264ENST00000637985 A0A1W2PPV4 95 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 DIRC3C9JPN6 131 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 SIVA1O15304 175 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 PTTG1O95997 202 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 ZNF266Q14584 549 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 PQLC2Q6ZP29 291 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 NFE4Q86UQ8 179 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 Q8TAT8 98 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 ARPC5LQ9BPX5 153 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 OTORQ9NRC9 128 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 TP53TG3Q9ULZ0 132 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 KLF12Q9Y4X4 402 aa11.08□□□□□ -0.64
CLN3-264ENST00000637985 FAM74A1Q5RGS3 127 aa11.07□□□□□ -0.64
CLN3-264ENST00000637985 ARL6IP6Q8N6S5 226 aa11.07□□□□□ -0.64
CLN3-264ENST00000637985 TMED6Q8WW62 240 aa11.07□□□□□ -0.64
CLN3-264ENST00000637985 PGPA6NDG6 321 aa11.06□□□□□ -0.64
CLN3-264ENST00000637985 Q6ZQT7 251 aa11.06□□□□□ -0.64
CLN3-264ENST00000637985 ST6GAL2Q96JF0 529 aa11.06□□□□□ -0.64
CLN3-264ENST00000637985 ZNF415Q09FC8 603 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 Q6AWC8 147 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 OR10G4Q8NGN3 311 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 OR10G9Q8NGN4 311 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 OR10G7Q8NGN6 311 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 CMTM2Q8TAZ6 248 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 VSIG2Q96IQ7 327 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 HYLS1Q96M11 299 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 MED28Q9H204 178 aa11.05□□□□□ -0.64
CLN3-264ENST00000637985 A0A096LPF7 62 aa11.04□□□□□ -0.64
CLN3-264ENST00000637985 RAB2AP61019 212 aa11.04□□□□□ -0.64
CLN3-264ENST00000637985 SLAQ13239 276 aa11.04□□□□□ -0.64
CLN3-264ENST00000637985 OR2G3Q8NGZ4 309 aa11.04□□□□□ -0.64
CLN3-264ENST00000637985 AQP10Q96PS8 301 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms