RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CTRLP40313 264 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 LINC01559Q495D7 138 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 KLK15Q9H2R5 256 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 NRN1Q9NPD7 142 aa14.01□□□□□ -0.17
CLN3-263ENST00000637871 C2CD3Q4AC94 2353 aa14□□□□□ -0.17
CLN3-263ENST00000637871 ELANEP08246 267 aa14□□□□□ -0.17
CLN3-263ENST00000637871 ARMS2P0C7Q2 107 aa14□□□□□ -0.17
CLN3-263ENST00000637871 HLA-DMBP28068 263 aa14□□□□□ -0.17
CLN3-263ENST00000637871 RCHY1Q96PM5 261 aa14□□□□□ -0.17
CLN3-263ENST00000637871 DAZ1Q9NQZ3 744 aaKnown RBP14□□□□□ -0.17
CLN3-263ENST00000637871 IGHV3-66A0A0C4DH42 116 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 IGHV7-4-1A0A0J9YVY3 117 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 TRBV7-9A0A0J9YWB2 115 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 ZNF207O43670 478 aaKnown RBP13.99□□□□□ -0.17
CLN3-263ENST00000637871 FER1L6-AS1Q8NA97 138 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 AGPAT4-IT1Q9H0P7 198 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 UFC1Q9Y3C8 167 aa13.99□□□□□ -0.17
CLN3-263ENST00000637871 FAM181BA6NEQ2 426 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 OR5AL1P0C617 328 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 IGLC6P0CF74 106 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 IGFL4Q6B9Z1 124 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 LYZL1Q6UWQ5 148 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 CNFNQ9BYD5 112 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 ATRQ13535 2644 aa13.98□□□□□ -0.17
CLN3-263ENST00000637871 FBN1P35555 2871 aaKnown RBP13.97□□□□□ -0.17
CLN3-263ENST00000637871 RNASE1P07998 156 aaKnown RBP13.97□□□□□ -0.17
CLN3-263ENST00000637871 ZNF705DP0CH99 300 aaPredicted RBP13.97□□□□□ -0.17
CLN3-263ENST00000637871 ZNF705BP0CI00 300 aaPredicted RBP13.97□□□□□ -0.17
CLN3-263ENST00000637871 CTAG1AP78358 180 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 UNQ9165/PRO28630Q6UXU0 137 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 Q6ZS46 218 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 NIT1Q86X76 327 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 ZNF664Q8N3J9 261 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 TMEM86BQ8N661 226 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 Q8TAT8 98 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 JMJD8Q96S16 334 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 SMPXQ9UHP9 88 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 PRAC2D3DTV9 90 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 TRBV12-3P01733 135 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 IGHV3-11P01762 117 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 DDTP30046 118 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 DEFA6Q01524 100 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 TEX43Q6ZNM6 134 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 RNF182Q8N6D2 247 aa13.97□□□□□ -0.17
CLN3-263ENST00000637871 IGHV3OR16-13A0A075B7E8 117 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 IGHV3-74A0A0B4J1X5 117 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 ORM1P02763 201 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 LINC00614P0C842 121 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 ZNF80P51504 273 aaPredicted RBP13.96□□□□□ -0.17
CLN3-263ENST00000637871 ERCC8Q13216 396 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 OR10J6PQ8NGY7 276 aa13.96□□□□□ -0.17
CLN3-263ENST00000637871 IGHV3-49A0A0A0MS15 119 aa13.95□□□□□ -0.18
CLN3-263ENST00000637871 SOCS3O14543 225 aa13.95□□□□□ -0.18
CLN3-263ENST00000637871 ID1P41134 155 aa13.95□□□□□ -0.18
CLN3-263ENST00000637871 RNASEKQ6P5S7 137 aaKnown RBP13.95□□□□□ -0.18
CLN3-263ENST00000637871 ZNF738Q8NE65 137 aa13.95□□□□□ -0.18
CLN3-263ENST00000637871 RHPN1-AS1Q9BWJ2 59 aa13.95□□□□□ -0.18
CLN3-263ENST00000637871 M0R2Z0 102 aa13.94□□□□□ -0.18
CLN3-263ENST00000637871 FAM104BQ5XKR9 115 aa13.94□□□□□ -0.18
CLN3-263ENST00000637871 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.94□□□□□ -0.18
CLN3-263ENST00000637871 RNF152Q8N8N0 203 aa13.94□□□□□ -0.18
CLN3-263ENST00000637871 U3KQK5 164 aa13.94□□□□□ -0.18
CLN3-263ENST00000637871 KRTDAPP60985 99 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 PMCHL1Q16048 86 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 KRTAP24-1Q3LI83 254 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 MYOZ3Q8TDC0 251 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 TPPP3Q9BW30 176 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 KIR2DL5BA0A0G2JN68 375 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 KIR2DL5BA0A0G2JPC4 375 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 PPBPP02775 128 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 NTF3P20783 257 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 KIR2DL5AQ8N109 375 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 Q8N2B8 174 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 C20orf144Q9BQM9 153 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 TMEM191AQ9H0A3 160 aa13.93□□□□□ -0.18
CLN3-263ENST00000637871 TMSB15BA0A087X1C1 80 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 LGALS9O00182 355 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 REC114Q7Z4M0 266 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 UBE2E2Q96LR5 201 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 PRO1933Q9H354 126 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 LAMTOR2Q9Y2Q5 125 aa13.92□□□□□ -0.18
CLN3-263ENST00000637871 LGALS1P09382 135 aaKnown RBP13.91□□□□□ -0.18
CLN3-263ENST00000637871 TMEM95Q3KNT9 176 aa13.91□□□□□ -0.18
CLN3-263ENST00000637871 ORMDL3Q8N138 153 aa13.91□□□□□ -0.18
CLN3-263ENST00000637871 ZNF702PQ9H963 129 aa13.91□□□□□ -0.18
CLN3-263ENST00000637871 C3orf79P0CE67 100 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 BTF3P20290 206 aaKnown RBP13.9□□□□□ -0.18
CLN3-263ENST00000637871 CACNG7P62955 275 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 TWIST1Q15672 202 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 Q6ZSV7 163 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 FAM19A2Q8N3H0 131 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 VAMP8Q9BV40 100 aa13.9□□□□□ -0.18
CLN3-263ENST00000637871 LBHQ53QV2 105 aaPredicted RBP13.9□□□□□ -0.19
CLN3-263ENST00000637871 TM4SF20Q53R12 229 aa13.9□□□□□ -0.19
CLN3-263ENST00000637871 NDUFAF3Q9BU61 184 aa13.9□□□□□ -0.19
CLN3-263ENST00000637871 TRAV21A0A0B4J279 112 aa13.89□□□□□ -0.19
CLN3-263ENST00000637871 RPL11P62913 178 aaKnown RBP13.89□□□□□ -0.19
CLN3-263ENST00000637871 SMIM15Q7Z3B0 74 aa13.89□□□□□ -0.19
CLN3-263ENST00000637871 URB1-AS1Q96HZ7 61 aa13.89□□□□□ -0.19
CLN3-263ENST00000637871 HSPB8Q9UJY1 196 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms