RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 IGHG3P01860 377 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 RNASE2P10153 161 aaKnown RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 C3orf36Q3SXR2 165 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 IGHV3-48P01763 117 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 CRIP2P52943 208 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 DLX6P56179 175 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 C4orf26Q17RF5 130 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 C11orf53Q8IXP5 236 aa5.36□□□□□ -1.55
SCN1A-213ENST00000636759 BEX4Q9NWD9 120 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 TRBV10-2A0A0K0K1G8 114 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 CXCL13O43927 109 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 MRPL33O75394 65 aaKnown RBP5.35□□□□□ -1.55
SCN1A-213ENST00000636759 COX7CP15954 63 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 TMEM170BQ5T4T1 132 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 VPS13CQ709C8 3753 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 SLC25A16P16260 332 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 EFNA4P52798 201 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 TMEM190Q8WZ59 177 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 FAM240AA0A1B0GVK7 77 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 PROP1O75360 226 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 SEC61GP60059 68 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 TCF15Q12870 199 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 PLGLAQ15195 96 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 TEX36Q5VZQ5 186 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 WDR86Q86TI4 376 aa5.35□□□□□ -1.55
SCN1A-213ENST00000636759 UPK2O00526 184 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 PRDX2P32119 198 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 TMEM258P61165 79 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 LAGE3Q14657 143 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 EXOC3-AS1Q8N2X6 119 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 Q8N8P6 123 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 DCTN5Q9BTE1 182 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 ZNF318Q5VUA4 2279 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 TINCRA0A1B0GVN0 87 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 hADV29S1A0JD25 119 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 CFC1BP0CG36 223 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 CFC1P0CG37 223 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 HOXA4Q00056 320 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-213ENST00000636759 SPINK14Q6IE38 97 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 RELNP78509 3460 aa5.34□□□□□ -1.55
SCN1A-213ENST00000636759 K7EM74 188 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF415Q09FC8 603 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 PLEKHB2Q96CS7 222 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 LINC00477Q96M19 166 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 PRO0628Q9UI54 55 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 TNCP24821 2201 aa5.34□□□□□ -1.56
SCN1A-213ENST00000636759 CEMP1Q6PRD7 247 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-213ENST00000636759 CXorf67Q86X51 503 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-213ENST00000636759 MDS2Q8NDY4 140 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 DOCK7Q96N67 2140 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 OVOL1O14753 267 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 WNT9BO14905 357 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 SCGB3A1Q96QR1 104 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 KLK15Q9H2R5 256 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 PKIGQ9Y2B9 76 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 TRAV17A0A0B4J275 112 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 COX6CP09669 75 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 CRYGAP11844 174 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 MALP21145 153 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 TMEM75Q8N9X5 138 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 JPT2Q9H910 190 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 V9GYY9 64 aa5.33□□□□□ -1.56
SCN1A-213ENST00000636759 M0R3E3 92 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 ATOX1O00244 68 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 ACYP1P07311 99 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 P0DMU3 169 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 FAM231AP0DMU4 169 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 FAM231CP0DMU5 169 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 GP9P14770 177 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 LOXL3P58215 753 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 LYZP61626 148 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 DPH3Q96FX2 82 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 TTTY12Q9BZ98 90 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 SDK1Q7Z5N4 2213 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 DMXL1Q9Y485 3027 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 TRAV13-1A0A0B4J241 112 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 TRAV12-1A0A0B4J245 112 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 TRBV6-1A0A0K0K1D8 114 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 INS-IGF2F8WCM5 200 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 H3BT86 120 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 CRYGBP07316 175 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 GATA4P43694 442 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF134P52741 427 aa5.32□□□□□ -1.56
SCN1A-213ENST00000636759 OVOL3O00110 214 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 SH2D1AO60880 128 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 IGLV2-11P01706 119 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 TFF1P04155 84 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 EBI3Q14213 229 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 SIGLEC15Q6ZMC9 328 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF826PQ6ZT77 177 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 POM121L12Q8N7R1 296 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 KLHL30-AS1Q8NEE0 82 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 CFHR4Q92496 578 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 DSCR8Q96T75 97 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 HES7Q9BYE0 225 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 RAI1Q7Z5J4 1906 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-213ENST00000636759 TRAV41A0A0B4J266 112 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 Q71RC1 249 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-213ENST00000636759 LINC00643Q86TS7 51 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 ZCCHC24Q8N2G6 241 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms