RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-222	ENST00000621967	FAM104B	Q5XKR9	115 aa		13.45	□□□□□ -0.26
FAM3A-222	ENST00000621967	ZFAND3	Q9H8U3	227 aa		13.45	□□□□□ -0.26
FAM3A-222	ENST00000621967		A0A087X0K7	114 aa		13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	TMEM213	A2RRL7	107 aa		13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	RPS20	P60866	119 aa	Known RBP	13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	C15orf32	Q32M92	178 aa		13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	VGLL1	Q99990	258 aa		13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	ZNF747	Q9BV97	191 aa		13.44	□□□□□ -0.26
FAM3A-222	ENST00000621967	MXRA5	Q9NR99	2828 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	NSD1	Q96L73	2696 aa	Predicted RBP	13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	TMSB15B	A0A087X1C1	80 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	hDV102S1	A0JD36	115 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	HINT1	P49773	126 aa	Predicted RBP	13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	RAB9A	P51151	201 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	ZNF80	P51504	273 aa	Predicted RBP	13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	UNQ5815/PRO19632	Q6UWF5	114 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	FA2H	Q7L5A8	372 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	MEGF9	Q9H1U4	602 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	ATP6V0E1	O15342	81 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	IGLC6	P0CF74	106 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	HLA-DMB	P28068	263 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	GPR183	P32249	361 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	BMI1	P35226	326 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	ZNF575	Q86XF7	245 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	OR10AG1	Q8NH19	301 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967	PRSS3P2	Q8NHM4	247 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967		Q8TAT8	98 aa		13.43	□□□□□ -0.26
FAM3A-222	ENST00000621967		D6R8Y8	96 aa		13.42	□□□□□ -0.26
FAM3A-222	ENST00000621967		A0A096LNJ9	63 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	BUB3	O43684	328 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	RHOG	P84095	191 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	ECSCR	Q19T08	205 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	AMN1	Q8IY45	258 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	ORMDL3	Q8N138	153 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	MS4A6A	Q9H2W1	248 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	IFI27	P40305	119 aa	Predicted RBP	13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	MRPL51	Q4U2R6	128 aa	Known RBP	13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	IGFL4	Q6B9Z1	124 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	FER1L6-AS1	Q8NA97	138 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	ORAOV1	Q8WV07	137 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	PRELID3A	Q96N28	172 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	SCRT2	Q9NQ03	307 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	SIGLEC8	Q9NYZ4	499 aa		13.41	□□□□□ -0.26
FAM3A-222	ENST00000621967	RBAKDN	A6NC62	111 aa		13.4	□□□□□ -0.26
FAM3A-222	ENST00000621967	HSBP1L1	C9JCN9	74 aa		13.4	□□□□□ -0.26
FAM3A-222	ENST00000621967	CCDC140	Q96MF4	163 aa		13.4	□□□□□ -0.26
FAM3A-222	ENST00000621967	CNFN	Q9BYD5	112 aa		13.4	□□□□□ -0.26
FAM3A-222	ENST00000621967	IGHV3OR16-8	A0A075B7F1	116 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	IGHV3-35	A0A0C4DH35	117 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	CLPSL1	A2RUU4	121 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967		H3BUX3	64 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	CLEC3B	P05452	202 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	FAM106A	Q4KMX7	169 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	SLC25A34	Q6PIV7	304 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	SLC50A1	Q9BRV3	221 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	MCRIP2	Q9BUT9	160 aa	Known RBP	13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967	TP73-AS1	Q9UF72	201 aa		13.39	□□□□□ -0.27
FAM3A-222	ENST00000621967		Q6YL49	198 aa		13.38	□□□□□ -0.27
FAM3A-222	ENST00000621967	IGHV4-59	P01825	116 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	FN1	P02751	2386 aa	Known RBP	13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	FABP5P3	A8MUU1	101 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	PRAC2	D3DTV9	90 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967		G3V318	75 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	CRLF1	O75462	422 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	NCR2	O95944	276 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	LY6E	Q16553	131 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	LINC01559	Q495D7	138 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	C5orf56	Q8N8D9	126 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	EEF1AKMT3	Q96AZ1	226 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	COX11	Q9Y6N1	276 aa		13.37	□□□□□ -0.27
FAM3A-222	ENST00000621967	LINC01548	A6NM66	108 aa		13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967		H0Y8G0	127 aa		13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	HOXA3	O43365	443 aa	Predicted RBP	13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	TWIST1	Q15672	202 aa		13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	PIFO	Q8TCI5	191 aa		13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	ZNF418	Q8TF45	676 aa	Predicted RBP	13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	TEP1	Q99973	2627 aa	Known RBP	13.36	□□□□□ -0.27
FAM3A-222	ENST00000621967	TRBV7-1	A0A0A6YYK4	115 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	MUC21	A0A0G2JKD1	596 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	MUC21	A0A140T8X8	626 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	LOC389332	A0A1B0GUA5	103 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	ERCC8	Q13216	396 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	MUC21	Q5SSG8	566 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	CLEC19A	Q6UXS0	136 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	PMCHL2	Q9BQD1	86 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	NPFFR1	Q9GZQ6	430 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	NPY	P01303	97 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	MPV17L2	Q567V2	206 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	TMEM219	Q86XT9	240 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	DPF1	Q92782	380 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	ATP6V0B	Q99437	205 aa		13.35	□□□□□ -0.27
FAM3A-222	ENST00000621967	ORM1	P02763	201 aa		13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	CKS2	P33552	79 aa		13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	C19orf54	Q5BKX5	351 aa		13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	RNF182	Q8N6D2	247 aa		13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	ZNF738	Q8NE65	137 aa		13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	MRPL53	Q96EL3	112 aa	Known RBP	13.34	□□□□□ -0.27
FAM3A-222	ENST00000621967	RNF185	Q96GF1	192 aa		13.34	□□□□□ -0.27

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