RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 DYNC1H1Q14204 4646 aaKnown RBP5.22□□□□□ -1.57
CUX1-219ENST00000606749 RBAKDNA6NC62 111 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 C17orf112F2Z3M2 114 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 SIVA1O15304 175 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 OR7C2O60412 319 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 CSN1S1P47710 185 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 CRYBA4P53673 196 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 KRTAP10-2P60368 255 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 SLAQ13239 276 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 FHL2Q14192 279 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 ZNF266Q14584 549 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 MAPKAPK5-AS1Q8N8E1 139 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 Q8TAT8 98 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 C8orf49Q96NF6 230 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 ATP5SQ99766 215 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 ARPC5LQ9BPX5 153 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 MARVELD1Q9BSK0 173 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 MRPL16Q9NX20 251 aaKnown RBP5.22□□□□□ -1.57
CUX1-219ENST00000606749 MDFICQ9P1T7 246 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 ICOSQ9Y6W8 199 aa5.22□□□□□ -1.57
CUX1-219ENST00000606749 DIRC3C9JPN6 131 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 NXPH4O95158 308 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 MPC2O95563 127 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 LINC00315P59091 139 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 ZNF415Q09FC8 603 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 MRPL23Q16540 153 aaKnown RBP5.21□□□□□ -1.58
CUX1-219ENST00000606749 FFAR4Q5NUL3 377 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 MUC21Q5SSG8 566 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 Q6AWC8 147 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 LYPD5Q6UWN5 251 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 Q6ZRN7 208 aaPredicted RBP5.21□□□□□ -1.58
CUX1-219ENST00000606749 IQCF2Q8IXL9 164 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 SCGB1C1Q8TD33 95 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 RASL10AQ92737 203 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 HSPB11Q9Y547 144 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 LENEPQ9Y5L5 61 aa5.21□□□□□ -1.58
CUX1-219ENST00000606749 TRGV4A0A0C4DH28 118 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 PGPA6NDG6 321 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 A6NHS1 94 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 IFNA5P01569 189 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 SFTA3P0C7M3 94 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 RPL12P30050 165 aaKnown RBP5.2□□□□□ -1.58
CUX1-219ENST00000606749 TAS2R45P59539 299 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 UBE2L3P68036 154 aaKnown RBP5.2□□□□□ -1.58
CUX1-219ENST00000606749 KHDC3LQ587J8 217 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 NEGR1Q7Z3B1 354 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 Q8N1X5 172 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 ZNF479Q96JC4 524 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 HYLS1Q96M11 299 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 SPXQ9BT56 116 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 SMIM3Q9BZL3 60 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 WFDC1Q9HC57 220 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 PGPEP1Q9NXJ5 209 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 MBD2Q9UBB5 411 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 TNFRSF18Q9Y5U5 241 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 HSPG2P98160 4391 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 DNAH11Q96DT5 4516 aa5.2□□□□□ -1.58
CUX1-219ENST00000606749 TRGV11A0A075B6L2 103 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 K7EQD1 137 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 GNRH2O43555 120 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 SSNA1O43805 119 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 EIF3GO75821 320 aaKnown RBP eCLIP5.19□□□□□ -1.58
CUX1-219ENST00000606749 PET100P0DJ07 73 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TMEM183BQ1AE95 376 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TDRG1Q3Y452 100 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 FAM159AQ6UWV7 190 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TMEM183AQ8IXX5 376 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 OR10G4Q8NGN3 311 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TMED6Q8WW62 240 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TVP23CQ96ET8 276 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 SCRT2Q9NQ03 307 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 OTORQ9NRC9 128 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 RYR1P21817 5038 aa5.19□□□□□ -1.58
CUX1-219ENST00000606749 TRAV9-2A0A087WT02 112 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 A0A1W2PPV4 95 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 M0R2P5 195 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 GYPEP15421 78 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 ACOT6Q3I5F7 207 aaPredicted RBP5.18□□□□□ -1.58
CUX1-219ENST00000606749 FAM74A1Q5RGS3 127 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 PQLC2Q6ZP29 291 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 GOLT1AQ6ZVE7 132 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 ARL6IP6Q8N6S5 226 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 CMTM2Q8TAZ6 248 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 PTTG2Q9NZH5 202 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 NAGKQ9UJ70 344 aa5.18□□□□□ -1.58
CUX1-219ENST00000606749 TRAV8-1A0A0A6YYK1 113 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 TRAV4A0A0B4J268 109 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 TRAV21A0A0B4J279 112 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 IGHV3-16A0A0C4DH30 117 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 K7EP13 123 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 EREGO14944 169 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 ORM1P02763 201 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 SRIP30626 198 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 FUSP35637 526 aaKnown RBP eCLIP5.17□□□□□ -1.58
CUX1-219ENST00000606749 DEFA1P59665 94 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 DEFA3P59666 94 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 RAB2AP61019 212 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 NFE4Q86UQ8 179 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 WFDC10BQ8IUB3 73 aa5.17□□□□□ -1.58
CUX1-219ENST00000606749 OR4C5Q8NGB2 326 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms